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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL SeqArray
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘SeqArray’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ConvToGDS.cpp -o ConvToGDS.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c FileMerge.cpp -o FileMerge.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c GetData.cpp -o GetData.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Index.cpp -o Index.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c LinkSNPRelate.cpp -o LinkSNPRelate.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Methods.cpp -o Methods.o
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c R_SeqArray.c -o R_SeqArray.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ReadBySample.cpp -o ReadBySample.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ReadByUnit.cpp -o ReadByUnit.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c ReadByVariant.cpp -o ReadByVariant.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c SeqArray.cpp -o SeqArray.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c pkg_test.cpp -o pkg_test.o
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c samtools_ext.c -o samtools_ext.o
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/bbs-3.14-bioc/R/library/gdsfmt/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c vectorization.c -o vectorization.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByUnit.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-SeqArray/00new/SeqArray/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SeqArray)