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This page was generated on 2022-01-19 13:07:28 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for STROMA4 on tokay2


To the developers/maintainers of the STROMA4 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STROMA4.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1893/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
STROMA4 1.18.0  (landing page)
Sadiq Saleh
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/STROMA4
git_branch: RELEASE_3_14
git_last_commit: c4891a5
git_last_commit_date: 2021-10-26 12:34:07 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: STROMA4
Version: 1.18.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:STROMA4.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings STROMA4_1.18.0.tar.gz
StartedAt: 2022-01-19 03:18:27 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 03:21:07 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 160.9 seconds
RetCode: 0
Status:   OK  
CheckDir: STROMA4.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:STROMA4.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings STROMA4_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/STROMA4.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'STROMA4/DESCRIPTION' ... OK
* this is package 'STROMA4' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'STROMA4' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
assign.properties 7.81   0.75   55.67
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
assign.properties 6.99   0.58   55.26
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

STROMA4.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/STROMA4_1.18.0.tar.gz && rm -rf STROMA4.buildbin-libdir && mkdir STROMA4.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=STROMA4.buildbin-libdir STROMA4_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL STROMA4_1.18.0.zip && rm STROMA4_1.18.0.tar.gz STROMA4_1.18.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 43155  100 43155    0     0   399k      0 --:--:-- --:--:-- --:--:--  401k

install for i386

* installing *source* package 'STROMA4' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'STROMA4'
    finding HTML links ... done
    B.stroma.property                       html  
    BL1.property                            html  
    BL2.property                            html  
    D.stroma.property                       html  
    E.stroma.property                       html  
    IM.property                             html  
    LAR.property                            html  
    M.property                              html  
    MSL.property                            html  
    T.stroma.property                       html  
    assign.properties                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'STROMA4' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'STROMA4' as STROMA4_1.18.0.zip
* DONE (STROMA4)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'STROMA4' successfully unpacked and MD5 sums checked

Tests output


Example timings

STROMA4.Rcheck/examples_i386/STROMA4-Ex.timings

nameusersystemelapsed
B.stroma.property0.020.000.02
BL1.property000
BL2.property0.010.000.02
D.stroma.property000
E.stroma.property000
IM.property0.000.010.01
LAR.property000
M.property000
MSL.property0.020.000.02
T.stroma.property000
assign.properties 7.81 0.7555.67

STROMA4.Rcheck/examples_x64/STROMA4-Ex.timings

nameusersystemelapsed
B.stroma.property0.000.020.02
BL1.property000
BL2.property000
D.stroma.property000
E.stroma.property000
IM.property000
LAR.property000
M.property0.020.000.01
MSL.property000
T.stroma.property000
assign.properties 6.99 0.5855.26