Leonard Goldstein
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/SGSeq |
| git_branch: RELEASE_3_14 |
| git_last_commit: 9468314 |
| git_last_commit_date: 2021-10-26 12:17:06 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:21 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SGSeq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SGSeq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1779/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SGSeq 1.28.0 (landing page) Leonard Goldstein
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SGSeq |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SGSeq_1.28.0.tar.gz && rm -rf SGSeq.buildbin-libdir && mkdir SGSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SGSeq.buildbin-libdir SGSeq_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SGSeq_1.28.0.zip && rm SGSeq_1.28.0.tar.gz SGSeq_1.28.0.zip |
| StartedAt: 2022-04-12 06:11:58 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:14:22 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 144.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SGSeq_1.28.0.tar.gz && rm -rf SGSeq.buildbin-libdir && mkdir SGSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SGSeq.buildbin-libdir SGSeq_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SGSeq_1.28.0.zip && rm SGSeq_1.28.0.tar.gz SGSeq_1.28.0.zip
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install for i386
* installing *source* package 'SGSeq' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SGSeq'
finding HTML links ... done
SGFeatureCounts html
SGFeatures html
SGSegments html
SGVariantCounts html
SGVariants html
TxFeatures html
analyzeFeatures html
analyzeVariants html
annotate html
annotateSGVariants html
assays html
convertToSGFeatures html
convertToTxFeatures html
exonCompatible html
exportFeatures html
filterFeatures html
findOverlapsRanges html
findSGVariants html
getBamInfo html
getSGFeatureCounts html
getSGFeatureCountsPerSample html
getSGVariantCounts html
gr html
importTranscripts html
junctionCompatible html
makeSGFeatureCounts html
makeVariantNames html
mergeTxFeatures html
plotCoverage html
plotFeatures html
plotSpliceGraph html
plotVariants html
predictCandidatesInternal html
predictCandidatesTerminal html
predictExonsInternal html
predictExonsTerminal html
predictJunctions html
predictSpliced html
predictTxFeatures html
predictTxFeaturesPerSample html
predictTxFeaturesPerStrand html
predictVariantEffects html
processTerminalExons html
removeExonsIsolated html
sgf_ann html
sgf_pred html
sgfc_ann html
sgfc_pred html
sgv_ann html
sgv_pred html
sgvc_ann html
sgvc_ann_from_bam html
sgvc_pred html
sgvc_pred_from_bam html
si html
slots html
splicesiteOverlap html
tx html
txf_ann html
txf_pred html
updateObject html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SGSeq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SGSeq' as SGSeq_1.28.0.zip
* DONE (SGSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'SGSeq' successfully unpacked and MD5 sums checked