############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Rtreemix_1.56.0.tar.gz && rm -rf Rtreemix.buildbin-libdir && mkdir Rtreemix.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rtreemix.buildbin-libdir Rtreemix_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Rtreemix_1.56.0.zip && rm Rtreemix_1.56.0.tar.gz Rtreemix_1.56.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 422k 100 422k 0 0 595k 0 --:--:-- --:--:-- --:--:-- 595k install for i386 * installing *source* package 'Rtreemix' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rtreemix.cc -o Rtreemix.o In file included from include/replaceleda.hh:7, from include/max_weight_branch.h:25, from include/mtree.h:14, from include/mtreemix.h:14, from Rtreemix.cc:3: Rtreemix.cc: In function 'SEXPREC* R_fit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:596:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ Rtreemix.cc: In function 'SEXPREC* R_fit1(SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:938:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ Rtreemix.cc: In function 'SEXPREC* R_fit0(SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:1281:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ Rtreemix.cc: In function 'SEXPREC* R_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:1728:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ Rtreemix.cc: In function 'SEXPREC* R_random(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:2629:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rtreemix_patch.cc -o Rtreemix_patch.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c WrapGraph.cc -o WrapGraph.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cfunctions.cc -o cfunctions.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmeans.cc -o kmeans.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c max_weight_branch.cc -o max_weight_branch.o In file included from include/replaceleda.hh:7, from include/max_weight_branch.h:25, from max_weight_branch.cc:11: max_weight_branch.cc: In function 'void DOT(replaceleda::graph&, replaceleda::map, std::__cxx11::basic_string >&, replaceleda::map, double>&, char*)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ max_weight_branch.cc:97:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G) ^~~~~~~~~~~~ max_weight_branch.cc: In function 'replaceleda::list > max_weight_subgraph_indeg_le_1(replaceleda::graph&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ max_weight_branch.cc:142:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G) // choose heaviest inedge ^~~~~~~~~~~~ max_weight_branch.cc: In function 'void contract_all_cycles(replaceleda::graph&, int, replaceleda::array > >, replaceleda::GRAPH, replaceleda::RefCountPtr >&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ max_weight_branch.cc:341:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G) ^~~~~~~~~~~~ max_weight_branch.cc: In function 'replaceleda::list > MAX_WEIGHT_BRANCHING(replaceleda::graph&, replaceleda::map, std::__cxx11::basic_string >&, replaceleda::edge_array&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ max_weight_branch.cc:432:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G[0]) // node labels ^~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mtree.cc -o mtree.o In file included from include/replaceleda.hh:7, from include/max_weight_branch.h:25, from include/mtree.h:14, from mtree.cc:12: mtree.cc: In function 'void mgraph_init(replaceleda::array >&, replaceleda::graph&, replaceleda::map, std::__cxx11::basic_string >&, replaceleda::edge_array&, replaceleda::map >&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:185:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G) ^~~~~~~~~~~~ include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:186:5: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ mtree.cc: In function 'replaceleda::list > mtree_bfs(replaceleda::graph&, replaceleda::node&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:272:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ mtree.cc: In function 'double mtree_like(replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map >&, replaceleda::map, double>&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:321:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ mtree.cc: In function 'replaceleda::integer_vector mtree_draw(int, replaceleda::graph&, replaceleda::node&, replaceleda::map, double>&, replaceleda::map, int>&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:444:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ mtree.cc: In function 'void mtree_directed(replaceleda::graph&, replaceleda::node&, replaceleda::map, double>&, double, double)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:784:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mtreemix.cc -o mtreemix.o In file included from include/replaceleda.hh:7, from include/max_weight_branch.h:25, from include/mtree.h:14, from mtreemix.cc:11: mtreemix.cc: In function 'double mtree_state(replaceleda::map, int>&, replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map >&, replaceleda::map, double>&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtreemix.cc:1035:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c replaceleda.cc -o replaceleda.o In file included from include/replaceleda.hh:7, from replaceleda.cc:2: replaceleda.cc: In function 'bool replaceleda::Is_Acyclic(replaceleda::graph&, replaceleda::list >&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:81:5: note: in expansion of macro 'forall_nodes' forall_nodes(v,G) ^~~~~~~~~~~~ replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::graph&, replaceleda::graph&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:128:5: note: in expansion of macro 'forall_nodes' forall_nodes(v, g_source){ ^~~~~~~~~~~~ replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::GRAPH, replaceleda::RefCountPtr >&, replaceleda::graph&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:149:5: note: in expansion of macro 'forall_nodes' forall_nodes(v, g_source){ ^~~~~~~~~~~~ replaceleda.cc: In function 'std::ostream& replaceleda::operator<<(std::ostream&, replaceleda::graph&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:352:5: note: in expansion of macro 'forall_nodes' forall_nodes(v, g){ ^~~~~~~~~~~~ replaceleda.cc: In function 'void replaceleda::printGraph(replaceleda::graph&, replaceleda::edge_array&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:373:5: note: in expansion of macro 'forall_nodes' forall_nodes(v, g){ ^~~~~~~~~~~~ C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Rtreemix.dll tmp.def Rtreemix.o Rtreemix_patch.o WrapGraph.o cfunctions.o kmeans.o max_weight_branch.o mtree.o mtreemix.o replaceleda.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/Rtreemix.buildbin-libdir/00LOCK-Rtreemix/00new/Rtreemix/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rtreemix' finding HTML links ... done L1.dist html L2.norm html Pval.dist html RtreemixData-class html RtreemixGPS-class html RtreemixModel-class html RtreemixSim-class html RtreemixStats-class html bootstrap-methods html comp.models html comp.trees html confIntGPS-methods html distribution-methods html fit-methods html generate-methods html get.tree.levels html gps-methods html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/Rtreemix.buildbin-libdir/00LOCK-Rtreemix/00new/Rtreemix/help/gps.html hiv.data html kullback.leibler html likelihoods-methods html sim-methods html stability.sim html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Rtreemix' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rtreemix.cc -o Rtreemix.o In file included from include/replaceleda.hh:7, from include/max_weight_branch.h:25, from include/mtree.h:14, from include/mtreemix.h:14, from Rtreemix.cc:3: Rtreemix.cc: In function 'SEXPREC* R_fit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:596:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ Rtreemix.cc: In function 'SEXPREC* R_fit1(SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:938:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ Rtreemix.cc: In function 'SEXPREC* R_fit0(SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:1281:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ Rtreemix.cc: In function 'SEXPREC* R_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:1728:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ Rtreemix.cc: In function 'SEXPREC* R_random(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ Rtreemix.cc:2629:7: note: in expansion of macro 'forall_nodes' forall_nodes (n, G[k]) { ^~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rtreemix_patch.cc -o Rtreemix_patch.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c WrapGraph.cc -o WrapGraph.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cfunctions.cc -o cfunctions.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmeans.cc -o kmeans.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c max_weight_branch.cc -o max_weight_branch.o In file included from include/replaceleda.hh:7, from include/max_weight_branch.h:25, from max_weight_branch.cc:11: max_weight_branch.cc: In function 'void DOT(replaceleda::graph&, replaceleda::map, std::__cxx11::basic_string >&, replaceleda::map, double>&, char*)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ max_weight_branch.cc:97:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G) ^~~~~~~~~~~~ max_weight_branch.cc: In function 'replaceleda::list > max_weight_subgraph_indeg_le_1(replaceleda::graph&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ max_weight_branch.cc:142:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G) // choose heaviest inedge ^~~~~~~~~~~~ max_weight_branch.cc: In function 'void contract_all_cycles(replaceleda::graph&, int, replaceleda::array > >, replaceleda::GRAPH, replaceleda::RefCountPtr >&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ max_weight_branch.cc:341:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G) ^~~~~~~~~~~~ max_weight_branch.cc: In function 'replaceleda::list > MAX_WEIGHT_BRANCHING(replaceleda::graph&, replaceleda::map, std::__cxx11::basic_string >&, replaceleda::edge_array&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ max_weight_branch.cc:432:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G[0]) // node labels ^~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mtree.cc -o mtree.o In file included from include/replaceleda.hh:7, from include/max_weight_branch.h:25, from include/mtree.h:14, from mtree.cc:12: mtree.cc: In function 'void mgraph_init(replaceleda::array >&, replaceleda::graph&, replaceleda::map, std::__cxx11::basic_string >&, replaceleda::edge_array&, replaceleda::map >&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:185:3: note: in expansion of macro 'forall_nodes' forall_nodes(v, G) ^~~~~~~~~~~~ include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:186:5: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ mtree.cc: In function 'replaceleda::list > mtree_bfs(replaceleda::graph&, replaceleda::node&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:272:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ mtree.cc: In function 'double mtree_like(replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map >&, replaceleda::map, double>&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:321:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ mtree.cc: In function 'replaceleda::integer_vector mtree_draw(int, replaceleda::graph&, replaceleda::node&, replaceleda::map, double>&, replaceleda::map, int>&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:444:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ mtree.cc: In function 'void mtree_directed(replaceleda::graph&, replaceleda::node&, replaceleda::map, double>&, double, double)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtree.cc:784:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mtreemix.cc -o mtreemix.o In file included from include/replaceleda.hh:7, from include/max_weight_branch.h:25, from include/mtree.h:14, from mtreemix.cc:11: mtreemix.cc: In function 'double mtree_state(replaceleda::map, int>&, replaceleda::integer_vector&, replaceleda::graph&, replaceleda::map >&, replaceleda::map, double>&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mtreemix.cc:1035:3: note: in expansion of macro 'forall_nodes' forall_nodes(w, G) ^~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c replaceleda.cc -o replaceleda.o In file included from include/replaceleda.hh:7, from replaceleda.cc:2: replaceleda.cc: In function 'bool replaceleda::Is_Acyclic(replaceleda::graph&, replaceleda::list >&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:81:5: note: in expansion of macro 'forall_nodes' forall_nodes(v,G) ^~~~~~~~~~~~ replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::graph&, replaceleda::graph&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:128:5: note: in expansion of macro 'forall_nodes' forall_nodes(v, g_source){ ^~~~~~~~~~~~ replaceleda.cc: In function 'void replaceleda::CopyGraph(replaceleda::GRAPH, replaceleda::RefCountPtr >&, replaceleda::graph&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:149:5: note: in expansion of macro 'forall_nodes' forall_nodes(v, g_source){ ^~~~~~~~~~~~ replaceleda.cc: In function 'std::ostream& replaceleda::operator<<(std::ostream&, replaceleda::graph&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:352:5: note: in expansion of macro 'forall_nodes' forall_nodes(v, g){ ^~~~~~~~~~~~ replaceleda.cc: In function 'void replaceleda::printGraph(replaceleda::graph&, replaceleda::edge_array&)': include/Graph.hh:16:55: warning: value computed is not used [-Wunused-value] #define forall_nodes(n,G) for(uint icount = 0; icount < G.number_of_nodes() , n = G.getNode(icount);++icount) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~ replaceleda.cc:373:5: note: in expansion of macro 'forall_nodes' forall_nodes(v, g){ ^~~~~~~~~~~~ C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Rtreemix.dll tmp.def Rtreemix.o Rtreemix_patch.o WrapGraph.o cfunctions.o kmeans.o max_weight_branch.o mtree.o mtreemix.o replaceleda.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/Rtreemix.buildbin-libdir/Rtreemix/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'Rtreemix' as Rtreemix_1.56.0.zip * DONE (Rtreemix) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'Rtreemix' successfully unpacked and MD5 sums checked