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###
### Running command:
###
###   rm -rf ReactomeGSA.buildbin-libdir && mkdir ReactomeGSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ReactomeGSA.buildbin-libdir ReactomeGSA_1.8.0.tar.gz
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install for i386

* installing *source* package 'ReactomeGSA' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'analyse_sc_clusters' with signature 'object="Seurat"': no definition for class "Seurat"
in method for 'analyse_sc_clusters' with signature 'object="SingleCellExperiment"': no definition for class "SingleCellExperiment"
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="EList"': no definition for class "EList"
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="DGEList"': no definition for class "DGEList"
in method for 'add_dataset' with signature 'request="ReactomeAnalysisRequest",expression_values="ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
  converting help for package 'ReactomeGSA'
    finding HTML links ... done
    ReactomeAnalysisRequest                 html  
    ReactomeAnalysisResult-class            html  
    add_dataset-ReactomeAnalysisRequest-DGEList-method
                                            html  
    add_dataset-ReactomeAnalysisRequest-EList-method
                                            html  
    add_dataset-ReactomeAnalysisRequest-ExpressionSet-method
                                            html  
    add_dataset-ReactomeAnalysisRequest-data.frame-method
                                            html  
    add_dataset-ReactomeAnalysisRequest-matrix-method
                                            html  
    add_dataset                             html  
    analyse_sc_clusters-Seurat-method       html  
    analyse_sc_clusters-SingleCellExperiment-method
                                            html  
    analyse_sc_clusters                     html  
    break_names                             html  
    checkRequestValidity                    html  
    check_reactome_url                      html  
    convert_reactome_result                 html  
    data_frame_as_string                    html  
    get_fc_for_dataset                      html  
    get_is_sig_dataset                      html  
    get_reactome_analysis_result            html  
    get_reactome_analysis_status            html  
    get_reactome_data_types                 html  
    get_reactome_methods                    html  
    get_result-ReactomeAnalysisResult-method
                                            html  
    get_result                              html  
    is_gsva_result                          html  
    names-ReactomeAnalysisResult-method     html  
    open_reactome-ReactomeAnalysisResult-method
                                            html  
    open_reactome                           html  
    pathways-ReactomeAnalysisResult-method
                                            html  
    pathways                                html  
    perform_reactome_analysis               html  
    plot_correlations-ReactomeAnalysisResult-method
                                            html  
    plot_correlations                       html  
    plot_gsva_heatmap-ReactomeAnalysisResult-method
                                            html  
    plot_gsva_heatmap                       html  
    plot_gsva_pathway-ReactomeAnalysisResult-method
                                            html  
    plot_gsva_pathway                       html  
    plot_gsva_pca-ReactomeAnalysisResult-method
                                            html  
    plot_gsva_pca                           html  
    plot_heatmap-ReactomeAnalysisResult-method
                                            html  
    plot_heatmap                            html  
    plot_volcano-ReactomeAnalysisResult-method
                                            html  
    plot_volcano                            html  
    print-ReactomeAnalysisRequest-method    html  
    print-ReactomeAnalysisResult-method     html  
    reactome_links-ReactomeAnalysisResult-method
                                            html  
    reactome_links                          html  
    remove_dataset-ReactomeAnalysisRequest-method
                                            html  
    remove_dataset                          html  
    result_types-ReactomeAnalysisResult-method
                                            html  
    result_types                            html  
    set_method-ReactomeAnalysisRequest-method
                                            html  
    set_method                              html  
    set_parameters-ReactomeAnalysisRequest-method
                                            html  
    set_parameters                          html  
    show-ReactomeAnalysisRequest-method     html  
    show-ReactomeAnalysisResult-method      html  
    start_reactome_analysis                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ReactomeGSA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ReactomeGSA' as ReactomeGSA_1.8.0.zip
* DONE (ReactomeGSA)