############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RVS_1.16.0.tar.gz && rm -rf RVS.buildbin-libdir && mkdir RVS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RVS.buildbin-libdir RVS_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RVS_1.16.0.zip && rm RVS_1.16.0.tar.gz RVS_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 13 756k 13 104k 0 0 498k 0 0:00:01 --:--:-- 0:00:01 497k 100 756k 100 756k 0 0 963k 0 --:--:-- --:--:-- --:--:-- 963k install for i386 * installing *source* package 'RVS' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RVS' finding HTML links ... done ComputeKinshipPropCoef-methods html GeneDrop html RVS html RVgene html RVsharing-methods html SnpMatrixToCount html ancestorDistance html areMating html checkArgs html computePFU html computePhiVec html convertMatrix html createNetwork html denomProb html enrichmentPValue html enrichmentPValue_R_Backend html ex.ped.mat html exactSharingProb html extract_carriers html fam15157.vcf html fam28003.vcf html founderOccurence html get.psubset html inferNumAlleles html inferTheta html isDescendant html marginalProb html monteCarloSharingProb html multipleFamilyPValue html multipleFamilyPValue_R_Backend html multipleVariantPValue html multipleVariantPValue_R_Backend html numerProb html oldArgs html oneFounderSharingProb html oneFounderSharingProbSplitting html ped2trio html processPedigree-methods html relatedFoundersCorrection html runMonteCarlo html samplePedigrees html simulatePedigree html snpMat html twoFounderSharingProb html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'RVS' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'RVS' as RVS_1.16.0.zip * DONE (RVS) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'RVS' successfully unpacked and MD5 sums checked