############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RTN_2.18.0.tar.gz && rm -rf RTN.buildbin-libdir && mkdir RTN.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTN.buildbin-libdir RTN_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RTN_2.18.0.zip && rm RTN_2.18.0.tar.gz RTN_2.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 4 9707k 4 461k 0 0 1225k 0 0:00:07 --:--:-- 0:00:07 1226k 27 9707k 27 2644k 0 0 1887k 0 0:00:05 0:00:01 0:00:04 1887k 47 9707k 47 4651k 0 0 1939k 0 0:00:05 0:00:02 0:00:03 1938k 68 9707k 68 6654k 0 0 1963k 0 0:00:04 0:00:03 0:00:01 1963k 93 9707k 93 9060k 0 0 2065k 0 0:00:04 0:00:04 --:--:-- 2065k 100 9707k 100 9707k 0 0 2116k 0 0:00:04 0:00:04 --:--:-- 2196k install for i386 * installing *source* package 'RTN' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RTN' finding HTML links ... done AVS-class html RTN-package html RTN.data html TNA-class html TNI-class html TNI.data html avs.evse html avs.get html avs.pevse html avs.plot1 html avs.plot2 html avs.rvse html avs.vse html tna.get html tna.gsea1 html tna.gsea2 html tna.mra html tna.plot.gsea1 html tna.plot.gsea2 html tni.alpha.adjust html tni.annotate.regulons html tni.annotate.samples html tni.area3 html finding level-2 HTML links ... done tni.bootstrap html tni.conditional html tni.constructor html tni.dpi.filter html tni.get html tni.graph html tni.gsea2 html tni.overlap.genesets html tni.permutation html tni.plot.checks html tni.plot.sre html tni.preprocess html tni.prune html tni.regulon.summary html tni.replace.samples html tni.sre html tni2tna.preprocess html upgradeTNA html upgradeTNI html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'RTN' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'RTN' as RTN_2.18.0.zip * DONE (RTN) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'RTN' successfully unpacked and MD5 sums checked