############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RProtoBufLib_2.6.0.tar.gz && rm -rf RProtoBufLib.buildbin-libdir && mkdir RProtoBufLib.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RProtoBufLib.buildbin-libdir RProtoBufLib_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RProtoBufLib_2.6.0.zip && rm RProtoBufLib_2.6.0.tar.gz RProtoBufLib_2.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 4622k 5 263k 0 0 613k 0 0:00:07 --:--:-- 0:00:07 613k 100 4622k 100 4622k 0 0 5118k 0 --:--:-- --:--:-- --:--:-- 5119k install for i386 * installing *source* package 'RProtoBufLib' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386/Rscript.exe" "../tools/downloadlibs.R" 3.13.0 "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.13.0/include -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GatingSet_pb_lib/GatingSet.pb.cc -o GatingSet_pb_lib/GatingSet.pb.o mkdir -p "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/include" cp -r ../windows/protobuf-3.13.0/include/google "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/include" mkdir -p "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/i386" cp ../windows/protobuf-3.13.0/lib/i386/libprotobuf.a "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/i386/libprotobuf.a" cp GatingSet_pb_lib/GatingSet.pb.o "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/i386/GatingSet.pb.o" "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.13.0/include -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dummy.cpp -o dummy.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o RProtoBufLib.dll tmp.def dummy.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RProtoBufLib' finding HTML links ... done LdFlags html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'RProtoBufLib' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64/Rscript.exe" "../tools/downloadlibs.R" 3.13.0 "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.13.0/include -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GatingSet_pb_lib/GatingSet.pb.cc -o GatingSet_pb_lib/GatingSet.pb.o mkdir -p "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/include" cp -r ../windows/protobuf-3.13.0/include/google "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/include" mkdir -p "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/lib/x64" cp ../windows/protobuf-3.13.0/lib/x64/libprotobuf.a "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/lib/x64/libprotobuf.a" cp GatingSet_pb_lib/GatingSet.pb.o "C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/lib/x64/GatingSet.pb.o" "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.13.0/include -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dummy.cpp -o dummy.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o RProtoBufLib.dll tmp.def dummy.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/RProtoBufLib.buildbin-libdir/RProtoBufLib/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'RProtoBufLib' as RProtoBufLib_2.6.0.zip * DONE (RProtoBufLib) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'RProtoBufLib' successfully unpacked and MD5 sums checked