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###
### Running command:
###
###   rm -rf R453Plus1Toolbox.buildbin-libdir && mkdir R453Plus1Toolbox.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=R453Plus1Toolbox.buildbin-libdir R453Plus1Toolbox_1.44.0.tar.gz
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install for i386

* installing *source* package 'R453Plus1Toolbox' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c readSFF.c -o readSFF.o
readSFF.c: In function 'readSFF':
readSFF.c:27:7: warning: variable 'block_count' set but not used [-Wunused-but-set-variable]
   int block_count;
       ^~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c writeSFF.c -o writeSFF.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o R453Plus1Toolbox.dll tmp.def readSFF.o writeSFF.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/R453Plus1Toolbox.buildbin-libdir/00LOCK-R453Plus1Toolbox/00new/R453Plus1Toolbox/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'R453Plus1Toolbox'
    finding HTML links ... done
    AVASet-class                            html  
    finding level-2 HTML links ... done

    AVASet                                  html  
    AnnotatedVariants-class                 html  
    Breakpoints-class                       html  
    MapperSet-class                         html  
    MapperSet                               html  
    SFFContainer-class                      html  
    SFFRead-class                           html  
    alignShortReads                         html  
    annotateVariants                        html  
    assayDataAmp                            html  
    ava2vcf                                 html  
    avaSetExample                           html  
    avaSetFiltered                          html  
    avaSetFiltered_annot                    html  
    baseFrequency                           html  
    baseQualityHist                         html  
    baseQualityStats                        html  
    breakpoints                             html  
    calculateTiTv                           html  
    captureArray                            html  
    complexity.dust                         html  
    complexity.entropy                      html  
    convertCigar                            html  
    coverageOnTarget                        html  
    demultiplexReads                        html  
    detectBreakpoints                       html  
    dinucleotideOddsRatio                   html  
    fDataAmp                                html  
    featureDataAmp                          html  
    filterChimericReads                     html  
    flowgramBarplot                         html  
    gcContent                               html  
    gcContentHist                           html  
    gcPerPosition                           html  
    genomeSequencerMIDs                     html  
    getAlignedReads                         html  
    getAminoAbbr                            html  
    getVariantPercentages                   html  
    homopolymerHist                         html  
    htmlReport                              html  
    mapperSetExample                        html  
    mergeBreakpoints                        html  
    mutationInfo                            html  
    nucleotideCharts                        html  
    plotAmpliconCoverage                    html  
    plotChimericReads                       html  
    plotVariants                            html  
    plotVariationFrequency                  html  
    positionQualityBoxplot                  html  
    qualityReportSFF                        html  
    readLengthHist                          html  
    readLengthStats                         html  
    readSFF                                 html  
    readsOnTarget                           html  
    referenceSequences                      html  
    regions                                 html  
    removeLinker                            html  
    sequenceCaptureLinkers                  html  
    sequenceQualityHist                     html  
    setVariantFilter                        html  
    sff2fastq                               html  
    variants                                html  
    writeSFF                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'R453Plus1Toolbox' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c readSFF.c -o readSFF.o
readSFF.c: In function 'readSFF':
readSFF.c:27:7: warning: variable 'block_count' set but not used [-Wunused-but-set-variable]
   int block_count;
       ^~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c writeSFF.c -o writeSFF.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o R453Plus1Toolbox.dll tmp.def readSFF.o writeSFF.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'R453Plus1Toolbox' as R453Plus1Toolbox_1.44.0.zip
* DONE (R453Plus1Toolbox)