############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/QDNAseq_1.30.0.tar.gz && rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QDNAseq.buildbin-libdir QDNAseq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL QDNAseq_1.30.0.zip && rm QDNAseq_1.30.0.tar.gz QDNAseq_1.30.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 585k 100 585k 0 0 1411k 0 --:--:-- --:--:-- --:--:-- 1413k install for i386 * installing *source* package 'QDNAseq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'QDNAseq' finding HTML links ... done LGG150 html QDNAseq-defunct html QDNAseq-package html QDNAseqCopyNumbers html QDNAseqReadCounts html QDNAseqSignals html addPhenodata html applyFilters html binReadCounts html callBins html compareToReference html correctBins html createBins html estimateCorrection html exportBins html finding level-2 HTML links ... done frequencyPlot html getBinAnnotations html highlightFilters html isobarPlot html makeCgh html noisePlot html normalizeBins html normalizeSegmentedBins html plot html poolRuns html segmentBins html smoothOutlierBins html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'QDNAseq' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'QDNAseq' as QDNAseq_1.30.0.zip * DONE (QDNAseq) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'QDNAseq' successfully unpacked and MD5 sums checked