############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PubScore_1.6.0.tar.gz && rm -rf PubScore.buildbin-libdir && mkdir PubScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PubScore.buildbin-libdir PubScore_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PubScore_1.6.0.zip && rm PubScore_1.6.0.tar.gz PubScore_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 12 3061k 12 392k 0 0 806k 0 0:00:03 --:--:-- 0:00:03 806k 66 3061k 66 2030k 0 0 1369k 0 0:00:02 0:00:01 0:00:01 1368k 100 3061k 100 3061k 0 0 1571k 0 0:00:01 0:00:01 --:--:-- 1570k install for i386 * installing *source* package 'PubScore' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'PubScore' finding HTML links ... done PubScore-class html all_counts html dot-getSimulation_test html dot-query_pubmed html gene2pubmed_db html getScore html get_all_counts html get_literature_score html heatmapViz html hgcn_entrez_reference html initialize-PubScore-method html networkViz html plot_literature_graph html plot_literature_score html pubscore html set_all_counts html test_score html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'PubScore' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'PubScore' as PubScore_1.6.0.zip * DONE (PubScore) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'PubScore' successfully unpacked and MD5 sums checked