############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ProteoDisco_1.0.0.tar.gz && rm -rf ProteoDisco.buildbin-libdir && mkdir ProteoDisco.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProteoDisco.buildbin-libdir ProteoDisco_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ProteoDisco_1.0.0.zip && rm ProteoDisco_1.0.0.tar.gz ProteoDisco_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 232k 100 232k 0 0 311k 0 --:--:-- --:--:-- --:--:-- 312k install for i386 * installing *source* package 'ProteoDisco' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'print' in package 'ProteoDisco' Creating a new generic function for 'summary' in package 'ProteoDisco' ** help *** installing help indices converting help for package 'ProteoDisco' finding HTML links ... done ProteoDiscography html ProteoDiscographyExample.hg19 html checkProteotypicFragments html dot-checkReferenceAnchor html exportProteoDiscography html generateJunctionModels html generateProteoDiscography html getDiscography html importGenomicVariants.MAF html importGenomicVariants html importGenomicVariants.VCF html importSpliceJunctions html importTranscriptSequences html incorporateGenomicVariants html mutantTranscripts html organism html print html seqinfo html seqlevels html setGenomicSequences html setMutantTranscripts html setTxDb html show html summary html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ProteoDisco' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ProteoDisco' as ProteoDisco_1.0.0.zip * DONE (ProteoDisco) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ProteoDisco' successfully unpacked and MD5 sums checked