############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PharmacoGx_2.6.0.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_2.6.0.zip && rm PharmacoGx_2.6.0.tar.gz PharmacoGx_2.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 35 3577k 35 1253k 0 0 1576k 0 0:00:02 --:--:-- 0:00:02 1576k 100 3577k 100 3577k 0 0 2120k 0 0:00:01 0:00:01 --:--:-- 2121k install for i386 * installing *source* package 'PharmacoGx' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'PharmacoGx' finding HTML links ... done CCLEsmall html CMAPsmall html GDSCsmall html HDAC_genes html PharmacoSet-accessors html PharmacoSet-class html PharmacoSet-utils html PharmacoSet html PharmacoSet2 html PharmacoSig html amcc html availablePSets html callingWaterfall html checkPsetStructure html computeABC html computeAUC html computeAmax html computeICn html computeSlope html connectivityScore html cosinePerm html dim-PharmacoSet-method html dot-summarizeSensProfiles html downloadPSet html downloadPertSig html drugDoseResponseCurve html drugInfo-set html drugInfo html drugNames-set html drugNames html drugPerturbationSig html drugSensitivitySig-PharmacoSet-method html filterNoisyCurves html geneDrugSensitivity html gwc html intersectPSet html logLogisticRegression html mcc html plot.PharmacoSig html show-PharmacoSet-method html show-PharmacoSig-method html showSigAnnot-PharmacoSig-method html sub-PharmacoSet-ANY-ANY-ANY-method html subsetTo-PharmacoSet-method html summarizeMolecularProfiles-PharmacoSet-method html summarizeSensitivityProfiles-PharmacoSet-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'PharmacoGx' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'PharmacoGx' as PharmacoGx_2.6.0.zip * DONE (PharmacoGx) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'PharmacoGx' successfully unpacked and MD5 sums checked