############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf PWMEnrich.buildbin-libdir && mkdir PWMEnrich.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PWMEnrich.buildbin-libdir PWMEnrich_4.30.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'PWMEnrich' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'PWMEnrich' finding HTML links ... done DNAStringSetToList html MotifEnrichmentReport-class html MotifEnrichmentResults-class html PFMtoPWM html PWM-class html PWMCutoffBackground-class html PWMEmpiricalBackground-class html PWMEnrich-package html PWMGEVBackground-class html PWMLognBackground-class html PWMUnscaled html affinitySequenceSet html as.data.frame-MotifEnrichmentReport-method html cloverPvalue1seq html cloverScore html colMedians html colSds html concatenateSequences html cutoffZscore html cutoffZscoreSequenceSet html divideRows html dot-inputPFMfromMatrixOrPWM html dot-inputParamMotifs html dot-inputParamSequences html dot-normalize.bg.seq html dot-normargPfm html dot-normargPriorParams html empiricalPvalue html empiricalPvalueSequenceSet html getBackgroundFrequencies html getPromoters html gevPerSequence html groupReport-MotifEnrichmentResults-method html keepFinite html logNormPval html logNormPvalSequenceSet html makeBackground html makePWMCutoffBackground html makePWMEmpiricalBackground html makePWMGEVBackground html makePWMLognBackground html makePWMPvalCutoffBackground html makePWMPvalCutoffBackgroundFromSeq html makePriors html makeStartEndPos html matrixShuffleZscorePerSequence html maxAligned html motifDiffEnrichment html motifEcdf html motifEnrichment html motifIC html motifPrAUC html motifRankingForGroup-MotifEnrichmentResults-method html motifRankingForSequence-MotifEnrichmentResults-method html motifRecoveryAUC html motifScores html motifScoresBigMemory html motifSimilarity html operators-MotifEnrichmentReport html operators-MotifEnrichmentResults html operators-PWM html operators-PWMCutoffBackground html operators-PWMEmpiricalBackground html operators-PWMGEVBackground html operators-PWMLognBackground html plot-MotifEnrichmentReport-missing-method html plot-PWM-missing-method html plotMotifScores html plotMultipleMotifs html plotPFM html plotTopMotifsGroup-MotifEnrichmentResults-method html plotTopMotifsSequence-MotifEnrichmentResults-method html rankingProcessAndReturn html readJASPAR html readMotifs html readTRANSFAC html registerCoresPWMEnrich html reverseComplement-PWM-method html scanWithPWM html seqLogoGrid html sequenceReport-MotifEnrichmentResults-method html show-MotifEnrichmentReport-method html show-MotifEnrichmentResults-method html show-PWM-method html show-PWMCutoffBackground-method html show-PWMEmpiricalBackground-method html show-PWMGEVBackground-method html show-PWMLognBackground-method html subsetting-PWMCutoffBackground html subsetting-PWMEmpiricalBackground html subsetting-PWMGEVBackground html subsetting-PWMLognBackground html toPWM html tryAllMotifAlignments html useBigMemoryPWMEnrich html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'PWMEnrich' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'PWMEnrich' as PWMEnrich_4.30.0.zip * DONE (PWMEnrich)