Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:04 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for PDATK on tokay2


To the developers/maintainers of the PDATK package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PDATK.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1388/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PDATK 1.2.0  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/PDATK
git_branch: RELEASE_3_14
git_last_commit: ecf1881
git_last_commit_date: 2021-10-26 13:07:20 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: PDATK
Version: 1.2.0
Command: rm -rf PDATK.buildbin-libdir && mkdir PDATK.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PDATK.buildbin-libdir PDATK_1.2.0.tar.gz
StartedAt: 2022-04-13 06:47:27 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:48:39 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 71.8 seconds
RetCode: 0
Status:   OK  
PackageFile: PDATK_1.2.0.zip
PackageFileSize: 2.718 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf PDATK.buildbin-libdir && mkdir PDATK.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PDATK.buildbin-libdir PDATK_1.2.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'PDATK' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PDATK'
    finding HTML links ... done
    CSPC_MAE                                html  
    ClinicalModel-class                     html  
    ClinicalModel                           html  
    CohortList-class                        html  
    CohortList                              html  
    ConsensusMetaclusteringModel-class      html  
    ConsensusMetaclusteringModel            html  
    CoxModel-class                          html  
    CoxModel                                html  
    GeneFuModel-class                       html  
    GeneFuModel                             html  
    ModelComparison-class                   html  
    ModelComparison                         html  
    NCSModel-class                          html  
    NetworkCommunitySearchModel             html  
    PCOSP-class                             html  
    PCOSP                                   html  
    PCOSP_or_ClinicalModel-class            html  
    PCOSP_or_RLS_or_RGA-class               html  
    RGAModel-class                          html  
    RLSModel-class                          html  
    RandomGeneAssignmentModel               html  
    RandomLabelShufflingModel               html  
    S4Model-class                           html  
    SurvivalExperiment-class                html  
    SurvivalExperiment                      html  
    SurvivalModel-class                     html  
    SurvivalModel                           html  
    assignColDataColumn                     html  
    assignSubtypes-CohortList-list-method   html  
    assignSubtypes-SurvivalExperiment-data.frame-method
                                            html  
    assignSubtypes                          html  
    barPlotModelComparison-ClinicalModel-PCOSP_or_RLS_or_RGA-method
                                            html  
    barPlotModelComparison                  html  
    birnbaum                                html  
    chen                                    html  
    cohortSubtypeDFs                        html  
    compareModels-ModelComparison-SurvivalModel-method
                                            html  
    compareModels-SurvivalModel-SurvivalModel-method
                                            html  
    compareModels                           html  
    densityPlotModelComparison-PCOSP_or_RLS_or_RGA-PCOSP_or_RLS_or_RGA-method
                                            html  
    densityPlotModelComparison              html  
    dot-findAllCohortPairs                  html  
    dot-randomSampleIndex                   html  
    dropNotCensored-CohortList-method       html  
    dropNotCensored-SurvivalExperiment-method
                                            html  
    dropNotCensored                         html  
    existingClassifierData                  html  
    findCommonGenes-CohortList-method       html  
    findCommonGenes-MultiAssayExperiment-method
                                            html  
    findCommonGenes                         html  
    findCommonSamples-CohortList-method     html  
    findCommonSamples                       html  
    forestPlot-ModelComparison-method       html  
    forestPlot-PCOSP_or_ClinicalModel-method
                                            html  
    forestPlot                              html  
    getModelSeed-SurvivalModel-method       html  
    getModelSeed                            html  
    getTopFeatures-MultiAssayExperiment-method
                                            html  
    getTopFeatures-PCOSP-method             html  
    getTopFeatures-SummarizedExperiment-method
                                            html  
    getTopFeatures                          html  
    haiderSigScores                         html  
    hasColDataColumns                       html  
    merge-SurvivalExperiment-SurvivalExperiment-method
                                            html  
    modelParams-S4Model-method              html  
    modelParams-set-S4Model-List_or_list_or_NULL-method
                                            html  
    modelParams-set                         html  
    modelParams                             html  
    models-S4Model-method                   html  
    models-SurvivalModel-method             html  
    models-set-S4Model-List_or_list_or_NULL-method
                                            html  
    models-set-SurvivalModel-SimpleList-method
                                            html  
    models-set                              html  
    models                                  html  
    normalize-DFrame-method                 html  
    normalize-MultiAssayExperiment-method   html  
    normalize-SummarizedExperiment-method   html  
    normalize-data.frame_or_matrix-method   html  
    normalsMAE                              html  
    optimalKMinimizeAmbiguity               html  
    plotNetworkGraph-NCSModel-method        html  
    plotNetworkGraph                        html  
    plotROC-PCOSP-method                    html  
    plotROC                                 html  
    plotSurvivalCurves-CoxModel-method      html  
    plotSurvivalCurves                      html  
    predictClasses-CohortList-ClinicalModel-method
                                            html  
    predictClasses-CohortList-GeneFuModel-method
                                            html  
    predictClasses-CohortList-PCOSP_or_RLS_or_RGA-method
                                            html  
    predictClasses-ConsensusMetaclusteringModel-ANY-method
                                            html  
    predictClasses-NCSModel-ANY-method      html  
    predictClasses-SurvivalExperiment-ClinicalModel-method
                                            html  
    predictClasses-SurvivalExperiment-GeneFuModel-method
                                            html  
    predictClasses-SurvivalExperiment-PCOSP_or_RLS_or_RGA-method
                                            html  
    predictClasses                          html  
    preprocessCaret                         html  
    rankFeatures-MultiAssayExperiment-method
                                            html  
    rankFeatures-SummarizedExperiment-method
                                            html  
    rankFeatures                            html  
    removeColDataFactorColumns              html  
    removeFactorColumns                     html  
    renameColDataColumns                    html  
    renameColumns                           html  
    runGSEA-PCOSP-data.frame-method         html  
    runGSEA                                 html  
    sampleClinicalModel                     html  
    sampleCohortList                        html  
    sampleICGCmicro                         html  
    samplePCOSPmodel                        html  
    samplePCOSPpredList                     html  
    samplePCSIsurvExp                       html  
    sampleRGAmodel                          html  
    sampleRLSmodel                          html  
    sampleTrainedPCOSPmodel                 html  
    sampleValPCOSPmodel                     html  
    show-S4Model-method                     html  
    subset-CohortList-method                html  
    trainData-S4Model-method                html  
    trainData-set-S4Model-method            html  
    trainData-set                           html  
    trainData                               html  
    trainModel-ClinicalModel-method         html  
    trainModel-ConsensusMetaclusteringModel-method
                                            html  
    trainModel-CoxModel-method              html  
    trainModel-GeneFuModel-method           html  
    trainModel-NCSModel-method              html  
    trainModel-PCOSP-method                 html  
    trainModel-RGAModel-method              html  
    trainModel-RLSModel-method              html  
    trainModel                              html  
    validateModel-ClinicalModel-CohortList-method
                                            html  
    validateModel-ClinicalModel-SurvivalExperiment-method
                                            html  
    validateModel-ConsensusMetaclusteringModel-ConsensusMetaclusteringModel-method
                                            html  
    validateModel-GeneFuModel-CohortList-method
                                            html  
    validateModel-GeneFuModel-SurvivalExperiment-method
                                            html  
    validateModel-PCOSP_or_RLS_or_RGA-CohortList-method
                                            html  
    validateModel-PCOSP_or_RLS_or_RGA-SurvivalExperiment-method
                                            html  
    validateModel                           html  
    validationData-S4Model-method           html  
    validationData-SurvivalModel-method     html  
    validationData-set-S4Model-List_or_list_or_NULL-method
                                            html  
    validationData-set-SurvivalModel-CohortList-method
                                            html  
    validationData-set                      html  
    validationData                          html  
    validationStats-S4Model-method          html  
    validationStats-SurvivalModel-method    html  
    validationStats-set-S4Model-DFrame_or_data.frame_data.table_or_NULL-method
                                            html  
    validationStats-set-SurvivalModel-data.frame-method
                                            html  
    validationStats-set                     html  
    validationStats                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PDATK' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PDATK' as PDATK_1.2.0.zip
* DONE (PDATK)