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### Running command:
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###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OmnipathR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings OmnipathR_3.2.9.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OmnipathR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OmnipathR' version '3.2.9'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OmnipathR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[2022-04-11 00:06:32] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-11 00:06:33] [INFO]    [OmnipathR] Welcome to OmnipathR!
[2022-04-11 00:06:33] [TRACE]   [OmnipathR] Cache locked: FALSE
get_connections: no visible binding for global variable 'description'
get_connections: no visible binding for global variable 'con_id'
Undefined global functions or variables:
  con_id description
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'OmnipathR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: harmonizome_download
> ### Title: Downloads a Harmonizome network dataset
> ### Aliases: harmonizome_download
> 
> ### ** Examples
> 
> harmonizome_data <- harmonizome_download('phosphositeplus')
[2022-04-11 00:09:58] [INFO]    [OmnipathR] Looking up in cache `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`: key=ec4187d2e3f788b67450a4af5586d74c65db7687, no version available.
[2022-04-11 00:09:58] [INFO]    [OmnipathR] Created new version for cache record ec4187d2e3f788b67450a4af5586d74c65db7687: version 186.
[2022-04-11 00:09:58] [TRACE]   [OmnipathR] Cache file path: C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/ec4187d2e3f788b67450a4af5586d74c65db7687-186.gz
[2022-04-11 00:09:58] [INFO]    [OmnipathR] Retrieving URL: `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`
[2022-04-11 00:09:58] [TRACE]   [OmnipathR] Attempt 1/3: `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`
Error in curl::curl_fetch_disk(url, x$path, handle = handle) : 
  schannel: next InitializeSecurityContext failed: SEC_E_ILLEGAL_MESSAGE (0x80090326) - This error usually occurs when a fatal SSL/TLS alert is received (e.g. handshake failed).
Calls: harmonizome_download ... request_fetch -> request_fetch.write_disk -> <Anonymous>
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'OmnipathR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: harmonizome_download
> ### Title: Downloads a Harmonizome network dataset
> ### Aliases: harmonizome_download
> 
> ### ** Examples
> 
> harmonizome_data <- harmonizome_download('phosphositeplus')
[2022-04-11 00:12:34] [INFO]    [OmnipathR] Looking up in cache `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`: key=ec4187d2e3f788b67450a4af5586d74c65db7687, no version available.
[2022-04-11 00:12:34] [INFO]    [OmnipathR] Created new version for cache record ec4187d2e3f788b67450a4af5586d74c65db7687: version 187.
[2022-04-11 00:12:34] [TRACE]   [OmnipathR] Cache file path: C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/ec4187d2e3f788b67450a4af5586d74c65db7687-187.gz
[2022-04-11 00:12:34] [INFO]    [OmnipathR] Retrieving URL: `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`
[2022-04-11 00:12:34] [TRACE]   [OmnipathR] Attempt 1/3: `https://maayanlab.cloud/static/hdfs/harmonizome/data/phosphositeplus/gene_attribute_edges.txt.gz`
Error in curl::curl_fetch_disk(url, x$path, handle = handle) : 
  schannel: next InitializeSecurityContext failed: SEC_E_ILLEGAL_MESSAGE (0x80090326) - This error usually occurs when a fatal SSL/TLS alert is received (e.g. handshake failed).
Calls: harmonizome_download ... request_fetch -> request_fetch.write_disk -> <Anonymous>
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.Rcheck/00check.log'
for details.