############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OmaDB_2.10.0.tar.gz && rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OmaDB_2.10.0.zip && rm OmaDB_2.10.0.tar.gz OmaDB_2.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 211k 100 211k 0 0 618k 0 --:--:-- --:--:-- --:--:-- 620k install for i386 * installing *source* package 'OmaDB' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'OmaDB' finding HTML links ... done OmaDB-deprecated html OmaDB-package html annotateSequence html cash-.omadb_obj html formatTopGO html getAnnotation-deprecated html getAttribute html getData-deprecated html getGenome html getGenomeAlignment-deprecated html getGenomePairs html getHOG html getLocus html getOMAGroup html getObjectAttributes html getProtein html getTaxonomy html getTopGO html getTree html getVersion html getXref-deprecated html group html hog html mapSequence html orthologs html pairs html protein html resolveURL html searchProtein html sequence_annotation html sequence_map html setAPI html taxonomy html xref html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'OmaDB' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'OmaDB' as OmaDB_2.10.0.zip * DONE (OmaDB) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'OmaDB' successfully unpacked and MD5 sums checked