############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MungeSumstats_1.2.4.tar.gz && rm -rf MungeSumstats.buildbin-libdir && mkdir MungeSumstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MungeSumstats.buildbin-libdir MungeSumstats_1.2.4.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MungeSumstats_1.2.4.zip && rm MungeSumstats_1.2.4.tar.gz MungeSumstats_1.2.4.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 26 2313k 26 610k 0 0 615k 0 0:00:03 --:--:-- 0:00:03 615k 92 2313k 92 2140k 0 0 1063k 0 0:00:02 0:00:02 --:--:-- 1063k 100 2313k 100 2313k 0 0 1105k 0 0:00:02 0:00:02 --:--:-- 1105k install for i386 * installing *source* package 'MungeSumstats' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MungeSumstats' finding HTML links ... done api_query html axel html check_access_token html check_allele_flip html check_allele_merge html check_bi_allelic html check_chr html check_col_order html check_dup_bp html check_dup_col html check_dup_snp html check_effect_columns_nonzero html check_empty_cols html check_four_step_col html check_frq html check_frq_maf html check_info_score html check_ldsc_format html check_miss_data html check_multi_gwas html check_multi_rs_snp html check_n_int html check_n_num html check_no_allele html check_no_chr_bp html check_no_rs_snp html check_no_snp html check_on_ref_genome html check_pos_se html check_row_snp html check_save_path html check_signed_col html check_small_p_val html check_strand_ambiguous html check_tabular html check_two_step_col html check_vcf html check_vital_col html check_zscore html column_dictionary html compute_nsize html compute_sample_size html compute_sample_size_n html compute_sample_size_neff html convert_sumstats html download_vcf html downloader html dt_to_granges html find_sumstats html format_sumstats html get_access_token html get_chain_file html get_genome_build html get_genome_builds html get_query_content html get_unique_name_log_file html get_vcf_sample_ids html gwasinfo html hg19ToHg38 html hg38ToHg19 html ieu-a-298 html import_sumstats html index_tabular html infer_vcf_sample_ids html legacy_ids html liftover html load_ref_genome_data html load_snp_loc_data html message_parallel html preview_sumstats html raw_ALSvcf html raw_eduAttainOkbay html read_header html read_sumstats html read_vcf html remove_nonstandard_vcf_cols html report_summary html select_api html sort_coords html standardise_sumstats_column_headers_crossplatform html sumstatsColHeaders html supported_suffixes html to_GRanges html to_VRanges html validate_parameters html vcf2df html write_sumstats html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MungeSumstats' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MungeSumstats' as MungeSumstats_1.2.4.zip * DONE (MungeSumstats) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MungeSumstats' successfully unpacked and MD5 sums checked