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This page was generated on 2022-04-13 12:06:53 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for MicrobiotaProcess on tokay2


To the developers/maintainers of the MicrobiotaProcess package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MicrobiotaProcess.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1146/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MicrobiotaProcess 1.6.6  (landing page)
Shuangbin Xu
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/MicrobiotaProcess
git_branch: RELEASE_3_14
git_last_commit: 1623d4f
git_last_commit_date: 2022-04-06 09:09:04 -0400 (Wed, 06 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MicrobiotaProcess
Version: 1.6.6
Command: rm -rf MicrobiotaProcess.buildbin-libdir && mkdir MicrobiotaProcess.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MicrobiotaProcess.buildbin-libdir MicrobiotaProcess_1.6.6.tar.gz
StartedAt: 2022-04-13 06:36:14 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:37:49 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 94.4 seconds
RetCode: 0
Status:   OK  
PackageFile: MicrobiotaProcess_1.6.6.zip
PackageFileSize: 3.595 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf MicrobiotaProcess.buildbin-libdir && mkdir MicrobiotaProcess.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MicrobiotaProcess.buildbin-libdir MicrobiotaProcess_1.6.6.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'MicrobiotaProcess' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'taxonomy<-' with signature 'x="MPSE",value="taxonomyTable"': no definition for class "taxonomyTable"
Creating a generic function for 'rownames<-' from package 'base' in package 'MicrobiotaProcess'
in method for 'get_alltaxadf' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_taxadf' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_alphaindex' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_NRI_NTI' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_rarecurve' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_upset' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'get_vennlist' with signature '"phyloseq"': no definition for class "phyloseq"
in method for 'drop_taxa' with signature '"phyloseq"': no definition for class "phyloseq"
** help
*** installing help indices
  converting help for package 'MicrobiotaProcess'
    finding HTML links ... done
    ImportDada2                             html  
    ImportQiime2                            html  
    MPSE-accessors                          html  
    MPSE-class                              html  
    MPSE                                    html  
    alphasample-class                       html  
    as.MPSE                                 html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MicrobiotaProcess.buildbin-libdir/00LOCK-MicrobiotaProcess/00new/MicrobiotaProcess/help/as.mpse.html
    as.phyloseq                             html  
    as.treedata                             html  
    build_tree                              html  
    convert_to_treedata                     html  
    data-hmp_aerobiosis_small               html  
    data-kostic2012crc                      html  
    data-test_otu_data                      html  
    diffAnalysisClass-class                 html  
    diff_analysis                           html  
    dr_extract                              html  
    drop_taxa                               html  
    extract_binary_offspring                html  
    generalizedFC                           html  
    get_NRI_NTI-methods                     html  
    get_alltaxadf                           html  
    get_alphaindex                          html  
    get_clust                               html  
    get_coord                               html  
    get_count                               html  
    get_dist                                html  
    get_mean_median                         html  
    get_pca                                 html  
    get_pcoa                                html  
    get_pvalue                              html  
    get_rarecurve                           html  
    get_sampledflist                        html  
    get_taxadf                              html  
    get_upset                               html  
    get_varct                               html  
    get_vennlist                            html  
    ggbartax                                html  
    ggbox                                   html  
    ggclust                                 html  
    ggdiffbox                               html  
    ggdiffclade                             html  
    ggdifftaxbar                            html  
    ggeffectsize                            html  
    ggordpoint                              html  
    ggrarecurve                             html  
    finding level-2 HTML links ... done

    mouse.time.mpse                         html  
    mp_adonis-methods                       html  
    mp_aggregate-methods                    html  
    mp_aggregate_clade-methods              html  
    mp_anosim-methods                       html  
    mp_balance_clade-methods                html  
    mp_cal_abundance-methods                html  
    mp_cal_alpha-methods                    html  
    mp_cal_cca-methods                      html  
    mp_cal_clust-methods                    html  
    mp_cal_dca-methods                      html  
    mp_cal_dist-methods                     html  
    mp_cal_nmds-methods                     html  
    mp_cal_pca-methods                      html  
    mp_cal_pcoa-methods                     html  
    mp_cal_pd_metric-methods                html  
    mp_cal_rarecurve-methods                html  
    mp_cal_rda-methods                      html  
    mp_cal_upset-methods                    html  
    mp_cal_venn-methods                     html  
    mp_decostand-methods                    html  
    mp_diff_analysis-methods                html  
    mp_diff_clade-methods                   html  
    mp_envfit-methods                       html  
    mp_extract_abundance-methods            html  
    mp_extract_assays-methods               html  
    mp_extract_dist-methods                 html  
    mp_extract_feature-methods              html  
    mp_extract_internal_attr-methods        html  
    mp_extract_rarecurve-methods            html  
    mp_extract_refseq-methods               html  
    mp_extract_sample-methods               html  
    mp_extract_taxonomy-methods             html  
    mp_extract_tree-methods                 html  
    mp_filter_taxa-methods                  html  
    mp_fortify                              html  
    mp_import_metaphlan                     html  
    mp_import_qiime                         html  
    mp_mantel-methods                       html  
    mp_mrpp-methods                         html  
    mp_plot_abundance-methods               html  
    mp_plot_alpha-methods                   html  
    mp_plot_diff_res-methods                html  
    mp_plot_dist-methods                    html  
    mp_plot_ord-methods                     html  
    mp_plot_rarecurve-methods               html  
    mp_plot_upset-methods                   html  
    mp_plot_venn-methods                    html  
    mp_rrarefy-methods                      html  
    mp_select_as_tip-methods                html  
    mp_stat_taxa-methods                    html  
    multi_compare                           html  
    ordplotClass-class                      html  
    pcasample-class                         html  
    pcoa-class                              html  
    prcomp-class                            html  
    print                                   html  
    read_qza                                html  
    reexports                               html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MicrobiotaProcess.buildbin-libdir/00LOCK-MicrobiotaProcess/00new/MicrobiotaProcess/help/as.treedata.html
    set_scale_theme                         html  
    show-methods                            html  
    split_data                              html  
    split_str_to_list                       html  
    theme_taxbar                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MicrobiotaProcess' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MicrobiotaProcess' as MicrobiotaProcess_1.6.6.zip
* DONE (MicrobiotaProcess)