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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsTMTPTM
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* checking for file ‘MSstatsTMTPTM/DESCRIPTION’ ... OK
* preparing ‘MSstatsTMTPTM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MSstatsTMTPTM.Rmd’ using rmarkdown
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
  Bioconductor version 3.15
Quitting from lines 129-144 (MSstatsTMTPTM.Rmd) 
Error: processing vignette 'MSstatsTMTPTM.Rmd' failed with diagnostics:
Supplied 2 columns to be assigned 3 items. Please see NEWS for v1.12.2.
--- failed re-building ‘MSstatsTMTPTM.Rmd’

--- re-building ‘MSstatsTMTPTM.Workflow.rmd’ using rmarkdown

Attaching package: 'MSstats'

The following object is masked from 'package:grDevices':

    savePlot


Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 93-107 (MSstatsTMTPTM.Workflow.rmd) 
Error: processing vignette 'MSstatsTMTPTM.Workflow.rmd' failed with diagnostics:
Supplied 2 columns to be assigned 3 items. Please see NEWS for v1.12.2.
--- failed re-building ‘MSstatsTMTPTM.Workflow.rmd’

SUMMARY: processing the following files failed:
  ‘MSstatsTMTPTM.Rmd’ ‘MSstatsTMTPTM.Workflow.rmd’

Error: Vignette re-building failed.
Execution halted