############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsTMT_2.2.7.tar.gz && rm -rf MSstatsTMT.buildbin-libdir && mkdir MSstatsTMT.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsTMT.buildbin-libdir MSstatsTMT_2.2.7.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsTMT_2.2.7.zip && rm MSstatsTMT_2.2.7.tar.gz MSstatsTMT_2.2.7.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 95 1532k 95 1460k 0 0 1511k 0 0:00:01 --:--:-- 0:00:01 1510k 100 1532k 100 1532k 0 0 1526k 0 0:00:01 0:00:01 --:--:-- 1529k install for i386 * installing *source* package 'MSstatsTMT' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MSstatsTMT' finding HTML links ... done MSstatsComparisonModelSingleTMT html MSstatsFitComparisonModelsTMT html MSstatsGroupComparisonOutputTMT html MSstatsGroupComparisonTMT html MSstatsModerateTTest html MSstatsNormalizeTMT html MSstatsPrepareForGroupComparisonTMT html MSstatsPrepareForSummarizationTMT html MSstatsSummarizationOutputTMT html MSstatsSummarizeTMT html MSstatsTMT html MSstatsTestSingleProteinTMT html MaxQtoMSstatsTMTFormat html OpenMStoMSstatsTMTFormat html PDtoMSstatsTMTFormat html PhilosophertoMSstatsTMTFormat html SpectroMinetoMSstatsTMTFormat html annotation.mine html annotation.mq html annotation.pd html dataProcessPlotsTMT html dot-checkContrastMatrix html dot-checkSummarizationParams html dot-countRunsWithNorm html dot-documentFunction html dot-getNormalizationAbundance html dot-getRunsMedian html dot-handleSingleContrastTMT html dot-logSum html dot-logSummarizationParams html dot-makeContrastSingleTMT html dot-makeFactorColumnsTMT html dot-medianPolish html dot-normalizePeptides html dot-normalizeProteins html dot-prepareForSummarization html dot-removeRedundantChannels html dot-summarizeMSstats html dot-summarizeSimpleStat html dot-summarizeTMP html dot-summarizeTMT html evidence html getProcessedTMT html getSummarizedTMT html groupComparisonTMT html input.pd html proteinGroups html proteinSummarization html quant.pd.msstats html raw.mine html raw.om html raw.pd html test.pairwise html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MSstatsTMT' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MSstatsTMT' as MSstatsTMT_2.2.7.zip * DONE (MSstatsTMT) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MSstatsTMT' successfully unpacked and MD5 sums checked