############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsPTM_1.4.2.tar.gz && rm -rf MSstatsPTM.buildbin-libdir && mkdir MSstatsPTM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsPTM.buildbin-libdir MSstatsPTM_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsPTM_1.4.2.zip && rm MSstatsPTM_1.4.2.tar.gz MSstatsPTM_1.4.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 7 7289k 7 520k 0 0 1258k 0 0:00:05 --:--:-- 0:00:05 1257k 41 7289k 41 3022k 0 0 2142k 0 0:00:03 0:00:01 0:00:02 2142k 88 7289k 88 6442k 0 0 2671k 0 0:00:02 0:00:02 --:--:-- 2671k 100 7289k 100 7289k 0 0 2803k 0 0:00:02 0:00:02 --:--:-- 2803k install for i386 * installing *source* package 'MSstatsPTM' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_adjustment.cpp -o model_adjustment.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsPTM.dll tmp.def RcppExports.o model_adjustment.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSstatsPTM.buildbin-libdir/00LOCK-MSstatsPTM/00new/MSstatsPTM/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MSstatsPTM' finding HTML links ... done MSstatsPTM html MaxQtoMSstatsPTMFormat html ProgenesistoMSstatsPTMFormat html SpectronauttoMSstatsPTMFormat html annotSite html dataProcessPlotsPTM html dataSummarizationPTM html dataSummarizationPTM_TMT html groupComparisonPTM html groupComparisonPlotsPTM html locateMod html locatePTM html raw.input html raw.input.tmt html summary.data html summary.data.tmt html tidyFasta html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MSstatsPTM' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_adjustment.cpp -o model_adjustment.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsPTM.dll tmp.def RcppExports.o model_adjustment.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSstatsPTM.buildbin-libdir/MSstatsPTM/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'MSstatsPTM' as MSstatsPTM_1.4.2.zip * DONE (MSstatsPTM) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MSstatsPTM' successfully unpacked and MD5 sums checked