############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsConvert_1.4.1.tar.gz && rm -rf MSstatsConvert.buildbin-libdir && mkdir MSstatsConvert.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsConvert.buildbin-libdir MSstatsConvert_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsConvert_1.4.1.zip && rm MSstatsConvert_1.4.1.tar.gz MSstatsConvert_1.4.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 583k 100 583k 0 0 1550k 0 --:--:-- --:--:-- --:--:-- 1556k install for i386 * installing *source* package 'MSstatsConvert' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MSstatsConvert' finding HTML links ... done MSstatsBalancedDesign html MSstatsClean html MSstatsConvert html MSstatsImport html MSstatsInputFiles html MSstatsLogsSettings html MSstatsMakeAnnotation html MSstatsPreprocess html MSstatsSaveSessionInfo html as.data.frame.MSstatsValidated html as.data.table.MSstatsValidated html dot-MSstatsFormat html dot-addFractions html dot-adjustIntensities html dot-aggregatePSMstoPeptideIons html dot-checkAnnotation html dot-checkDDA html dot-checkDuplicatedMeasurements html dot-checkMSstatsParams html dot-checkMultiRun html dot-checkOverlappedFeatures html dot-cleanByFeature html dot-cleanRawDIAUmpire html dot-cleanRawMaxQuant html dot-cleanRawOpenMS html dot-cleanRawOpenSWATH html dot-cleanRawPD html dot-cleanRawPDMSstats html dot-cleanRawPDTMT html dot-cleanRawPhilosopher html dot-cleanRawProgenesis html dot-cleanRawSkyline html dot-cleanRawSpectroMineTMT html dot-cleanRawSpectronaut html dot-countCommonFeatures html dot-fillValues html dot-filterByPattern html dot-filterByScore html dot-filterExact html dot-filterFewMeasurements html dot-filterManyColumns html dot-filterOverlapped html dot-findAvailable html dot-fixBasicColumns html dot-fixColumnTypes html dot-fixMissingValues html dot-getChannelColumns html dot-getCorrectFraction html dot-getDataTable html dot-getFullDesign html dot-getMissingRunsPerFeature html dot-getOverlappingFeatures html dot-handleFiltering html dot-handleFractions html dot-handleFractionsLF html dot-handleFractionsTMT html dot-handleIsotopicPeaks html dot-handleSharedPeptides html dot-handleSingleFeaturePerProtein html dot-logConverterOptions html dot-logSuccess html dot-makeBalancedDesign html dot-makeExactFilterMessage html dot-makeScoreFilterMessage html dot-mergeAnnotation html dot-nullAppender html dot-onLoad html dot-removeOverlappingFeatures html dot-removeSharedPeptides html dot-selectMSstatsColumns html dot-standardizeColnames html dot-summarizeMultipleMeasurements html dot-summarizeMultiplePSMs html getDataType html getInputFile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MSstatsConvert' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MSstatsConvert' as MSstatsConvert_1.4.1.zip * DONE (MSstatsConvert) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MSstatsConvert' successfully unpacked and MD5 sums checked