############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MOMA_1.6.0.tar.gz && rm -rf MOMA.buildbin-libdir && mkdir MOMA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MOMA.buildbin-libdir MOMA_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MOMA_1.6.0.zip && rm MOMA_1.6.0.tar.gz MOMA_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 4071k 1 51087 0 0 261k 0 0:00:15 --:--:-- 0:00:15 261k 23 4071k 23 937k 0 0 789k 0 0:00:05 0:00:01 0:00:04 790k 52 4071k 52 2147k 0 0 984k 0 0:00:04 0:00:02 0:00:02 984k 98 4071k 98 4015k 0 0 1262k 0 0:00:03 0:00:03 --:--:-- 1262k 100 4071k 100 4071k 0 0 1266k 0 0:00:03 0:00:03 --:--:-- 1265k install for i386 * installing *source* package 'MOMA' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MOMA' finding HTML links ... done Moma-class html areaEnrich html associateEvents html checkGeneMap html checkList html checkMAE html checkPathways html clusterRange html clusterReliability html cnvScoreStouffer html conditionalModel html conditionalP html empiricalP html example.gbm.mae html fitCurvePercent html gbm.pathways html gene.map html genomicPlotSmall html getCoverage html getDataFrame html getDiggitEmpiricalQvalues html getEmpiricalQvals html getPvalsMatrix html getSubtypeEventTables html integrateFunction html integrateTZ html makeCoverageDf html makeSaturationPlots html mapEntrez html mapHugo html mapScoresCnvBand html mergeData html mergeDataBySubtype html mergeGenomicSaturation html mergeLists html momaConstructor html mutSig html oncoprintPlot html pathwayDiggitIntersect html plotEvents html rea html reaNULL html sREA html sampleNameFilter html sampleOverlap html sigInteractorsDIGGIT html stoufferIntegrate html stoufferIntegrateDiggit html subsetListInteractions html validDiggitInteractions html viperGetSigTFS html viperGetTFScores html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MOMA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MOMA' as MOMA_1.6.0.zip * DONE (MOMA) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MOMA' successfully unpacked and MD5 sums checked