############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Linnorm_2.18.0.tar.gz && rm -rf Linnorm.buildbin-libdir && mkdir Linnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Linnorm.buildbin-libdir Linnorm_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Linnorm_2.18.0.zip && rm Linnorm_2.18.0.tar.gz Linnorm_2.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 83 2420k 83 2018k 0 0 2556k 0 --:--:-- --:--:-- --:--:-- 2557k 100 2420k 100 2420k 0 0 2686k 0 --:--:-- --:--:-- --:--:-- 2686k install for i386 * installing *source* package 'Linnorm' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Misc.cpp -o Misc.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Linnorm.dll tmp.def Misc.o -std=c++11 -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -DARMA_64BIT_WORD=1 -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/Linnorm.buildbin-libdir/00LOCK-Linnorm/00new/Linnorm/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Linnorm' finding HTML links ... done Islam2011 html LIHC html LinearRegression html LinearRegressionFP html Linnorm.Cor html Linnorm.DataImput html Linnorm.HClust html Linnorm.HVar html Linnorm.Norm html Linnorm.PCA html Linnorm html Linnorm.SGenes html Linnorm.limma html Linnorm.tSNE html RnaXSim html SEQC html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Linnorm' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Misc.cpp -o Misc.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Linnorm.dll tmp.def Misc.o -std=c++11 -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -DARMA_64BIT_WORD=1 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/Linnorm.buildbin-libdir/Linnorm/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'Linnorm' as Linnorm_2.18.0.zip * DONE (Linnorm) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'Linnorm' successfully unpacked and MD5 sums checked