Back to Multiple platform build/check report for BioC 3.14
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-26 13:06:43 -0500 (Wed, 26 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for HiCDCPlus on tokay2


To the developers/maintainers of the HiCDCPlus package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCDCPlus.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 868/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiCDCPlus 1.2.1  (landing page)
Merve Sahin
Snapshot Date: 2022-01-25 01:55:07 -0500 (Tue, 25 Jan 2022)
git_url: https://git.bioconductor.org/packages/HiCDCPlus
git_branch: RELEASE_3_14
git_last_commit: 0d0adfa
git_last_commit_date: 2022-01-23 12:47:38 -0500 (Sun, 23 Jan 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  YES
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    TIMEOUT    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  YES

Summary

Package: HiCDCPlus
Version: 1.2.1
Command: rm -rf HiCDCPlus.buildbin-libdir && mkdir HiCDCPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCDCPlus.buildbin-libdir HiCDCPlus_1.2.1.tar.gz
StartedAt: 2022-01-26 06:22:12 -0500 (Wed, 26 Jan 2022)
EndedAt: 2022-01-26 06:23:41 -0500 (Wed, 26 Jan 2022)
EllapsedTime: 89.0 seconds
RetCode: 0
Status:   OK  
PackageFile: HiCDCPlus_1.2.1.zip
PackageFileSize: 2.18 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HiCDCPlus.buildbin-libdir && mkdir HiCDCPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCDCPlus.buildbin-libdir HiCDCPlus_1.2.1.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'HiCDCPlus' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c straw.cpp -o straw.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/HiCDCPlus.buildbin-libdir/00LOCK-HiCDCPlus/00new/HiCDCPlus/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HiCDCPlus'
    finding HTML links ... done
    HTClist2gi_list                         html  
    HiCDCPlus                               html  
    HiCDCPlus_chr                           html  
    HiCDCPlus_parallel                      html  
    add_1D_features                         html  
    add_2D_features                         html  
    add_hic_counts                          html  
    add_hicpro_allvalidpairs_counts         html  
    add_hicpro_matrix_counts                html  
    construct_features                      html  
    construct_features_chr                  html  
    construct_features_parallel             html  
    expand_1D_features                      html  
    extract_hic_eigenvectors                html  
    generate_binned_gi_list                 html  
    generate_bintolen_gi_list               html  
    generate_df_gi_list                     html  
    get_chr_sizes                           html  
    get_chrs                                html  
    get_enzyme_cutsites                     html  
    gi_list2HTClist                         html  
    gi_list_Dthreshold.detect               html  
    gi_list_binsize_detect                  html  
    gi_list_read                            html  
    gi_list_topdom                          html  
    gi_list_validate                        html  
    gi_list_write                           html  
    hic2icenorm_gi_list                     html  
    hicdc2hic                               html  
    hicdcdiff                               html  
    straw                                   html  
    straw_dump                              html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HiCDCPlus' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c straw.cpp -o straw.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/HiCDCPlus.buildbin-libdir/HiCDCPlus/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCDCPlus' as HiCDCPlus_1.2.1.zip
* DONE (HiCDCPlus)