############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCDCPlus_1.2.1.tar.gz && rm -rf HiCDCPlus.buildbin-libdir && mkdir HiCDCPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCDCPlus.buildbin-libdir HiCDCPlus_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCDCPlus_1.2.1.zip && rm HiCDCPlus_1.2.1.tar.gz HiCDCPlus_1.2.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 56 1010k 56 572k 0 0 1166k 0 --:--:-- --:--:-- --:--:-- 1167k 100 1010k 100 1010k 0 0 1414k 0 --:--:-- --:--:-- --:--:-- 1414k install for i386 * installing *source* package 'HiCDCPlus' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c straw.cpp -o straw.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/HiCDCPlus.buildbin-libdir/00LOCK-HiCDCPlus/00new/HiCDCPlus/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'HiCDCPlus' finding HTML links ... done HTClist2gi_list html HiCDCPlus html HiCDCPlus_chr html HiCDCPlus_parallel html add_1D_features html add_2D_features html add_hic_counts html add_hicpro_allvalidpairs_counts html add_hicpro_matrix_counts html construct_features html construct_features_chr html construct_features_parallel html expand_1D_features html extract_hic_eigenvectors html generate_binned_gi_list html generate_bintolen_gi_list html generate_df_gi_list html get_chr_sizes html get_chrs html get_enzyme_cutsites html gi_list2HTClist html gi_list_Dthreshold.detect html gi_list_binsize_detect html gi_list_read html gi_list_topdom html gi_list_validate html gi_list_write html hic2icenorm_gi_list html hicdc2hic html hicdcdiff html straw html straw_dump html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'HiCDCPlus' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c straw.cpp -o straw.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/HiCDCPlus.buildbin-libdir/HiCDCPlus/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'HiCDCPlus' as HiCDCPlus_1.2.1.zip * DONE (HiCDCPlus) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'HiCDCPlus' successfully unpacked and MD5 sums checked