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This page was generated on 2022-04-13 12:06:39 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for Glimma on tokay2


To the developers/maintainers of the Glimma package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Glimma.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 787/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Glimma 2.4.0  (landing page)
Shian Su
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/Glimma
git_branch: RELEASE_3_14
git_last_commit: caa270e
git_last_commit_date: 2021-10-26 12:27:00 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Glimma
Version: 2.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Glimma_2.4.0.tar.gz && rm -rf Glimma.buildbin-libdir && mkdir Glimma.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Glimma.buildbin-libdir Glimma_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Glimma_2.4.0.zip && rm Glimma_2.4.0.tar.gz Glimma_2.4.0.zip
StartedAt: 2022-04-12 06:01:07 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:03:33 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 145.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Glimma_2.4.0.tar.gz && rm -rf Glimma.buildbin-libdir && mkdir Glimma.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Glimma.buildbin-libdir Glimma_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Glimma_2.4.0.zip && rm Glimma_2.4.0.tar.gz Glimma_2.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 17 4959k   17  885k    0     0   952k      0  0:00:05 --:--:--  0:00:05  952k
 56 4959k   56 2802k    0     0  1457k      0  0:00:03  0:00:01  0:00:02 1457k
100 4959k  100 4959k    0     0  1836k      0  0:00:02  0:00:02 --:--:-- 1837k

install for i386

* installing *source* package 'Glimma' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Glimma'
    finding HTML links ... done
    arraydata                               html  
    as.hexcol                               html  
    buildXYData                             html  
    extractGroups                           html  
    glBar                                   html  
    glBar.default                           html  
    glMDPlot.DESeqDataSet                   html  
    glMDPlot.DESeqResults                   html  
    glMDPlot.DGEExact                       html  
    glMDPlot.DGELRT                         html  
    glMDPlot.MArrayLM                       html  
    glMDPlot                                html  
    glMDPlot.default                        html  
    glMDRmd                                 html  
    glMDSPlot.DESeqDataSet                  html  
    glMDSPlot.DGEList                       html  
    glMDSPlot                               html  
    glMDSPlot.default                       html  
    glScatter                               html  
    glScatter.default                       html  
    glTable                                 html  
    glXYPlot                                html  
    glimma                                  html  
    glimmaMA.DESeqDataSet                   html  
    glimmaMA.DGEExact                       html  
    glimmaMA.DGELRT                         html  
    glimmaMA.MArrayLM                       html  
    glimmaMA                                html  
    finding level-2 HTML links ... done

    glimmaMDS.DESeqDataSet                  html  
    glimmaMDS.DGEList                       html  
    glimmaMDS                               html  
    glimmaMDS.default                       html  
    glimmaVolcano.DESeqDataSet              html  
    glimmaVolcano.DGEExact                  html  
    glimmaVolcano.DGELRT                    html  
    glimmaVolcano.MArrayLM                  html  
    glimmaVolcano                           html  
    glimmaXY                                html  
    glimmaXYWidget                          html  
    glimma_plot                             html  
    gllink                                  html  
    gltablink                               html  
    is.hex                                  html  
    lymphomaRNAseq                          html  
    makeJson                                html  
    makeJson.data.frame                     html  
    makeJson.jschart                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Glimma' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Glimma' as Glimma_2.4.0.zip
* DONE (Glimma)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'Glimma' successfully unpacked and MD5 sums checked