############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GeomxTools.buildbin-libdir && mkdir GeomxTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeomxTools.buildbin-libdir GeomxTools_2.0.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GeomxTools' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GeomxTools' finding HTML links ... done NanoStringGeoMxSet-class html finding level-2 HTML links ... done aggregateCounts html checkQCFlags-NanoStringGeoMxSet-method html checkQCFlags html countsShiftedByOne html logtBase html mixedModelDE html ngeoMean html ngeoSD html normalize-NanoStringGeoMxSet-method html readDccFile html readNanoStringGeoMxSet html readPKCFile html setBackgroundQCFlags html setBioProbeQCFlags html setGeoMxQCFlags html setQCFlags-NanoStringGeoMxSet-method html setSegmentQCFlags html setSeqQCFlags html shiftCountsOne html summarizeNegatives html writeNanoStringGeoMxSet html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GeomxTools' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GeomxTools' as GeomxTools_2.0.0.zip * DONE (GeomxTools)