############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GenomicFeatures_1.46.5.tar.gz && rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicFeatures.buildbin-libdir GenomicFeatures_1.46.5.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures_1.46.5.zip && rm GenomicFeatures_1.46.5.tar.gz GenomicFeatures_1.46.5.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 7 1132k 7 91587 0 0 468k 0 0:00:02 --:--:-- 0:00:02 468k 100 1132k 100 1132k 0 0 1318k 0 --:--:-- --:--:-- --:--:-- 1318k install for i386 * installing *source* package 'GenomicFeatures' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GenomicFeatures' finding HTML links ... done FeatureDb-class html finding level-2 HTML links ... done TxDb-class html as-format-methods html coordinate-mapping-methods html coverageByTranscript html disjointExons html exonicParts html extractTranscriptSeqs html extractUpstreamSeqs html features html getPromoterSeq-methods html id2name html makeFeatureDbFromUCSC html makeTxDb html makeTxDbFromBiomart html makeTxDbFromEnsembl html makeTxDbFromGFF html makeTxDbFromGRanges html makeTxDbFromUCSC html makeTxDbPackage html mapIdsToRanges html mapRangesToIds html microRNAs html nearest-methods html select-methods html transcriptLengths html transcriptLocs2refLocs html transcripts html transcriptsBy html transcriptsByOverlaps html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GenomicFeatures' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GenomicFeatures' as GenomicFeatures_1.46.5.zip * DONE (GenomicFeatures) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'GenomicFeatures' successfully unpacked and MD5 sums checked