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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:GeneTonic.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings GeneTonic_1.6.4.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/GeneTonic.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneTonic/DESCRIPTION’ ... OK
* this is package ‘GeneTonic’ version ‘1.6.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GeneTonic’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
gs_mds                   10.983  0.452  11.446
gs_heatmap               10.865  0.194  11.071
summarize_ggs_hubgenes   10.606  0.237  10.884
ggs_graph                10.428  0.190  10.663
ggs_backbone             10.326  0.257  10.595
gs_scores                 9.972  0.218  10.240
GeneTonic                 9.316  0.344   9.669
gs_scoresheat             8.519  0.158   8.695
gs_dendro                 7.745  0.182   7.948
signature_volcano         7.648  0.219   7.912
export_for_iSEE           7.656  0.150   7.813
gene_plot                 6.927  0.255   7.230
gs_summary_overview       6.887  0.183   7.094
checkup_GeneTonic         6.606  0.225   6.837
get_aggrscores            6.533  0.220   6.832
gs_horizon                6.558  0.163   6.728
gs_summary_overview_pair  6.373  0.120   6.498
enhance_table             6.335  0.143   6.494
GeneTonic_list            6.253  0.221   6.479
gs_summary_heat           6.139  0.131   6.285
gs_alluvial               5.899  0.179   6.096
enrichment_map            5.887  0.107   5.997
happy_hour                5.742  0.125   5.870
distill_enrichment        5.628  0.184   5.845
gs_volcano                5.589  0.089   5.685
gs_radar                  5.383  0.268   6.030
checkup_gtl               5.163  0.158   5.324
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK