############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GeneBreak.buildbin-libdir && mkdir GeneBreak.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneBreak.buildbin-libdir GeneBreak_1.24.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GeneBreak' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'segmentData' in package 'GeneBreak' ** help *** installing help indices converting help for package 'GeneBreak' finding HTML links ... done CopyNumberBreakPointGenes-class html CopyNumberBreakPoints-class html GeneBreak html accessOptions-CopyNumberBreakPoints-method html addGeneAnnotation-CopyNumberBreakPoints-method html bpFilter-CopyNumberBreakPoints-method html bpGenes-CopyNumberBreakPointGenes-method html bpPlot-CopyNumberBreakPoints-method html bpStats-CopyNumberBreakPoints-method html breakpointData-CopyNumberBreakPoints-method html breakpointsPerGene-CopyNumberBreakPointGenes-method html callData-CopyNumberBreakPoints-method html copynumber.data.chr18 html copynumber.data.chr20 html copynumber.data.chr21 html ens.gene.ann.hg18 html ens.gene.ann.hg19 html ens.gene.ann.hg38 html featureChromosomes-CopyNumberBreakPoints-method html featureInfo-CopyNumberBreakPoints-method html featuresPerGene-CopyNumberBreakPointGenes-method html geneChromosomes-CopyNumberBreakPointGenes-method html geneInfo-CopyNumberBreakPointGenes-method html getBreakpoints html namesFeatures-CopyNumberBreakPoints-method html recurrentGenes-CopyNumberBreakPointGenes-method html sampleNames-CopyNumberBreakPoints-method html segmentData-CopyNumberBreakPoints-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GeneBreak' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GeneBreak' as GeneBreak_1.24.0.zip * DONE (GeneBreak)