############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GeneAnswers_2.36.0.tar.gz && rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAnswers.buildbin-libdir GeneAnswers_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GeneAnswers_2.36.0.zip && rm GeneAnswers_2.36.0.tar.gz GeneAnswers_2.36.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 32.6M 1 598k 0 0 997k 0 0:00:33 --:--:-- 0:00:33 997k 7 32.6M 7 2436k 0 0 1551k 0 0:00:21 0:00:01 0:00:20 1551k 15 32.6M 15 5195k 0 0 2021k 0 0:00:16 0:00:02 0:00:14 2021k 26 32.6M 26 8865k 0 0 2483k 0 0:00:13 0:00:03 0:00:10 2483k 40 32.6M 40 13.0M 0 0 2927k 0 0:00:11 0:00:04 0:00:07 2928k 54 32.6M 54 17.6M 0 0 3242k 0 0:00:10 0:00:05 0:00:05 3513k 64 32.6M 64 20.9M 0 0 3265k 0 0:00:10 0:00:06 0:00:04 3804k 77 32.6M 77 25.1M 0 0 3402k 0 0:00:09 0:00:07 0:00:02 4112k 92 32.6M 92 30.2M 0 0 3615k 0 0:00:09 0:00:08 0:00:01 4424k 100 32.6M 100 32.6M 0 0 3723k 0 0:00:08 0:00:08 --:--:-- 4547k install for i386 * installing *source* package 'GeneAnswers' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' ** help *** installing help indices converting help for package 'GeneAnswers' finding HTML links ... done DO html DOLite html DOLiteTerm html DmIALite html GeneAnswers-class html GeneAnswers-package html HsIALite html MmIALite html RnIALite html buildNet html caBIO.PATHGenes html caBIO2entrez html categoryNet html chartPlots html drawTable html entrez2caBIO html geneAnnotationHeatmap html geneAnswersBuilder html geneAnswersChartPlots html geneAnswersConceptNet html geneAnswersConceptRelation html geneAnswersConcepts html geneAnswersHeatmap html geneAnswersHomoMapping html geneAnswersReadable html geneAnswersSort html geneConceptNet html getCategoryList html getCategoryTerms html getConceptTable html getConnectedGraph html getDOLiteTerms html getGOList html getHomoGeneIDs html getListGIF html getMultiLayerGraphIDs html getNextGOIDs html getPATHList html getPATHTerms html getREACTOMEPATHList html getREACTOMEPATHTerms html getSingleLayerGraphIDs html getSymbols html getTotalGeneNumber html getcaBIOPATHList html getcaBIOPATHTerms html groupReport html humanExpr html humanGeneInput html mouseExpr html mouseGeneInput html sampleGroupsData html searchEntrez html topCategory html topCategoryGenes html topDOLITE html topDOLITEGenes html topGO html topGOGenes html topPATH html topPATHGenes html topREACTOME.PATH html topREACTOME.PATHGenes html topcaBIO.PATH html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' Warning: Package 'GeneAnswers' is deprecated and will be removed from Bioconductor version 3.15 ** testing if installed package can be loaded from final location Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' Warning: Package 'GeneAnswers' is deprecated and will be removed from Bioconductor version 3.15 ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GeneAnswers' ... ** testing if installed package can be loaded Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' Warning: Package 'GeneAnswers' is deprecated and will be removed from Bioconductor version 3.15 * MD5 sums packaged installation of 'GeneAnswers' as GeneAnswers_2.36.0.zip * DONE (GeneAnswers) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'GeneAnswers' successfully unpacked and MD5 sums checked