############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GENIE3_1.16.0.tar.gz && rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GENIE3_1.16.0.zip && rm GENIE3_1.16.0.tar.gz GENIE3_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 69 24972 69 17341 0 0 144k 0 --:--:-- --:--:-- --:--:-- 144k 100 24972 100 24972 0 0 207k 0 --:--:-- --:--:-- --:--:-- 208k install for i386 * installing *source* package 'GENIE3' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c GENIE3.c -o GENIE3.o GENIE3.c: In function 'find_the_best_threshold_multiregr': GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold.f=best_threshold; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'build_one_tree_ensemble': GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized] write_one_tree(current_tree, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GENIE3.c: In function 'find_the_best_threshold_symb_multiregr': GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate': GENIE3.c:1762:10: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized] return flag_continue; ^~~~~~~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GENIE3.buildbin-libdir/00LOCK-GENIE3/00new/GENIE3/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'GENIE3' with signature '"SummarizedExperiment"': no definition for class "SummarizedExperiment" in method for 'GENIE3' with signature '"ExpressionSet"': no definition for class "ExpressionSet" ** help *** installing help indices converting help for package 'GENIE3' finding HTML links ... done GENIE3 html getLinkList html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GENIE3' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c GENIE3.c -o GENIE3.o GENIE3.c: In function 'find_the_best_threshold_multiregr': GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold.f=best_threshold; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'build_one_tree_ensemble': GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized] write_one_tree(current_tree, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GENIE3.c: In function 'find_the_best_threshold_symb_multiregr': GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate': GENIE3.c:1762:10: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized] return flag_continue; ^~~~~~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GENIE3.buildbin-libdir/GENIE3/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GENIE3' as GENIE3_1.16.0.zip * DONE (GENIE3) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'GENIE3' successfully unpacked and MD5 sums checked