############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GA4GHclient_1.18.0.tar.gz && rm -rf GA4GHclient.buildbin-libdir && mkdir GA4GHclient.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GA4GHclient.buildbin-libdir GA4GHclient_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GA4GHclient_1.18.0.zip && rm GA4GHclient_1.18.0.tar.gz GA4GHclient_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 189k 100 189k 0 0 821k 0 --:--:-- --:--:-- --:--:-- 826k install for i386 * installing *source* package 'GA4GHclient' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient' ** help *** installing help indices converting help for package 'GA4GHclient' finding HTML links ... done GA4GHclient-package html HGVSnames html getBiosample html finding level-2 HTML links ... done getCallSet html getDataset html getExpressionLevel html getFeature html getFeatureSet html getIndividual html getReadGroupSet html getReference html getReferenceSet html getRnaQuantification html getRnaQuantificationSet html getVariant html getVariantAnnotationSet html getVariantSet html listReferenceBases html makeVCFFromGA4GHResponse html makeVCFHeaderFromGA4GHResponse html searchBiosamples html searchCallSets html searchDatasets html searchExpressionLevels html searchFeatureSets html searchFeatures html searchIndividuals html searchPhenotypeAssociationSets html searchPhenotypeAssociations html searchReadGroupSets html searchReads html searchReferenceSets html searchReferences html searchRnaQuantificationSets html searchRnaQuantifications html searchVariantAnnotationSets html searchVariantAnnotations html searchVariantSets html searchVariants html searchVariantsByGRanges html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient' ** testing if installed package can be loaded from final location No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GA4GHclient' ... ** testing if installed package can be loaded No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient' * MD5 sums packaged installation of 'GA4GHclient' as GA4GHclient_1.18.0.zip * DONE (GA4GHclient) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'GA4GHclient' successfully unpacked and MD5 sums checked