############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/EGAD_1.22.0.tar.gz && rm -rf EGAD.buildbin-libdir && mkdir EGAD.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EGAD.buildbin-libdir EGAD_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL EGAD_1.22.0.zip && rm EGAD_1.22.0.tar.gz EGAD_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 14.5M 2 408k 0 0 992k 0 0:00:15 --:--:-- 0:00:15 991k 15 14.5M 15 2334k 0 0 1656k 0 0:00:09 0:00:01 0:00:08 1656k 34 14.5M 34 5072k 0 0 2132k 0 0:00:06 0:00:02 0:00:04 2132k 59 14.5M 59 8889k 0 0 2631k 0 0:00:05 0:00:03 0:00:02 2630k 91 14.5M 91 13.3M 0 0 3114k 0 0:00:04 0:00:04 --:--:-- 3114k 100 14.5M 100 14.5M 0 0 3221k 0 0:00:04 0:00:04 --:--:-- 3439k install for i386 * installing *source* package 'EGAD' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'EGAD' finding HTML links ... done GO.human html GO.mouse html GO.voc html assortativity html atrr.human html attr.mouse html auc_multifunc html auprc html auroc_analytic html biogrid html build_binary_network html build_coexp_GEOID html build_coexp_expressionSet html build_coexp_network html build_semantic_similarity_network html build_weighted_network html calculate_multifunc html conv_smoother html example_annotations html example_binary_network html example_coexpression html example_neighbor_voting html extend_network html filter_network html filter_network_cols html filter_network_rows html filter_orthologs html fmeasure html genes html get_auc html get_biogrid html get_counts html get_density html get_expression_data_gemma html get_expression_matrix_from_GEO html get_phenocarta html get_prc html get_roc html make_annotations html make_gene_network html make_genelist html make_transparent html neighbor_voting html node_degree html ortho html pheno html plot_densities html plot_density_compare html plot_distribution html plot_network_heatmap html plot_prc html plot_roc html plot_roc_overlay html plot_value_compare html predictions html repmat html run_GBA html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'EGAD' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'EGAD' as EGAD_1.22.0.zip * DONE (EGAD) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'EGAD' successfully unpacked and MD5 sums checked