############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/EBcoexpress_1.38.0.tar.gz && rm -rf EBcoexpress.buildbin-libdir && mkdir EBcoexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EBcoexpress.buildbin-libdir EBcoexpress_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL EBcoexpress_1.38.0.zip && rm EBcoexpress_1.38.0.tar.gz EBcoexpress_1.38.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 19 83655 19 16048 0 0 134k 0 --:--:-- --:--:-- --:--:-- 133k 100 83655 100 83655 0 0 358k 0 --:--:-- --:--:-- --:--:-- 358k install for i386 * installing *source* package 'EBcoexpress' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c EBcoexpress.c -o EBcoexpress.o EBcoexpress.c: In function 'bwmcCworker': EBcoexpress.c:74:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] if(temp < -1 | temp > 1) ~~~~~^~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o EBcoexpress.dll tmp.def EBcoexpress.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/EBcoexpress.buildbin-libdir/00LOCK-EBcoexpress/00new/EBcoexpress/libs/i386 ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'EBcoexpress' finding HTML links ... done ebCoexpressMeta html ebCoexpressSeries html fiftyGenes html initializeHP html makeMyD html priorDiagnostic html rankMyGenes html showNetwork html showPair html utilities html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'EBcoexpress' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c EBcoexpress.c -o EBcoexpress.o EBcoexpress.c: In function 'bwmcCworker': EBcoexpress.c:74:15: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] if(temp < -1 | temp > 1) ~~~~~^~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o EBcoexpress.dll tmp.def EBcoexpress.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/EBcoexpress.buildbin-libdir/EBcoexpress/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'EBcoexpress' as EBcoexpress_1.38.0.zip * DONE (EBcoexpress) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'EBcoexpress' successfully unpacked and MD5 sums checked