############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DEComplexDisease_1.14.0.tar.gz && rm -rf DEComplexDisease.buildbin-libdir && mkdir DEComplexDisease.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEComplexDisease.buildbin-libdir DEComplexDisease_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DEComplexDisease_1.14.0.zip && rm DEComplexDisease_1.14.0.tar.gz DEComplexDisease_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 13 1146k 13 150k 0 0 359k 0 0:00:03 --:--:-- 0:00:03 359k 98 1146k 98 1132k 0 0 795k 0 0:00:01 0:00:01 --:--:-- 795k 100 1146k 100 1146k 0 0 804k 0 0:00:01 0:00:01 --:--:-- 804k install for i386 * installing *source* package 'DEComplexDisease' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sig.cpp -o sig.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DEComplexDisease.dll tmp.def RcppExports.o sig.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/DEComplexDisease.buildbin-libdir/00LOCK-DEComplexDisease/00new/DEComplexDisease/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DEComplexDisease' finding HTML links ... done Plot.cluster.module html Plot.deg html Plot.deg.specific html Plot.deg.specific.test html Plot.seed.module html ann.er html bi.deg html cl html cluster.mod html cluster.module html deg html deg.spc html deg.specific html exp html module.compare html module.curve html module.exact html module.modeling html module.overlap html module.screen html res.mod1 html res.mod2 html seed.mod html seed.module html summarize.cluster.module html summarize.deg.specific html summarize.seed.module html ** building package indices ** installing vignettes 'decd.Rmd' 'vignettes.Rmd' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DEComplexDisease' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sig.cpp -o sig.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DEComplexDisease.dll tmp.def RcppExports.o sig.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/DEComplexDisease.buildbin-libdir/DEComplexDisease/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'DEComplexDisease' as DEComplexDisease_1.14.0.zip * DONE (DEComplexDisease) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'DEComplexDisease' successfully unpacked and MD5 sums checked