############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ComplexHeatmap_2.10.0.tar.gz && rm -rf ComplexHeatmap.buildbin-libdir && mkdir ComplexHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ComplexHeatmap.buildbin-libdir ComplexHeatmap_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ComplexHeatmap_2.10.0.zip && rm ComplexHeatmap_2.10.0.tar.gz ComplexHeatmap_2.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 26 4575k 26 1199k 0 0 1191k 0 0:00:03 0:00:01 0:00:02 1192k 74 4575k 74 3405k 0 0 1699k 0 0:00:02 0:00:02 --:--:-- 1700k 100 4575k 100 4575k 0 0 1896k 0 0:00:02 0:00:02 --:--:-- 1897k install for i386 * installing *source* package 'ComplexHeatmap' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ComplexHeatmap' finding HTML links ... done AdditiveUnit-class html AdditiveUnit html AnnotationFunction-class html AnnotationFunction html ColorMapping-class html ColorMapping html ComplexHeatmap-package html Extract.AnnotationFunction html Extract.Heatmap html Extract.HeatmapAnnotation html Extract.HeatmapList html Extract.SingleAnnotation html Extract.comb_mat html Extract.gridtext html Heatmap-class html Heatmap html Heatmap3D html HeatmapAnnotation-class html HeatmapAnnotation html HeatmapList-class html HeatmapList html Legend html Legends-class html Legends html SingleAnnotation-class html SingleAnnotation html UpSet html add.AdditiveUnit html add_heatmap-Heatmap-method html add_heatmap-HeatmapAnnotation-method html add_heatmap-HeatmapList-method html add_heatmap-dispatch html adjust_dend_by_x html adjust_heatmap_list-HeatmapList-method html alter_graphic html anno_barplot html anno_block html anno_boxplot html anno_customize html anno_density html anno_empty html anno_histogram html anno_horizon html anno_image html anno_joyplot html anno_lines html anno_link html anno_mark html anno_oncoprint_barplot html anno_points html anno_simple html anno_summary html anno_text html anno_zoom html annotation_axis_grob html annotation_legend_size-HeatmapList-method html attach_annotation-Heatmap-method html bar3D html bin_genome html c.ColorMapping html c.HeatmapAnnotation html cluster_between_groups html cluster_within_group html color_mapping_legend-ColorMapping-method html columnAnnotation html column_dend-Heatmap-method html column_dend-HeatmapList-method html column_dend-dispatch html column_order-Heatmap-method html column_order-HeatmapList-method html column_order-dispatch html comb_degree html comb_name html comb_size html compare_heatmap.2 html compare_heatmap html compare_pheatmap html complement_size html component_height-Heatmap-method html component_height-HeatmapList-method html component_height-dispatch html component_width-Heatmap-method html component_width-HeatmapList-method html component_width-dispatch html copy_all-AnnotationFunction-method html copy_all-SingleAnnotation-method html copy_all-dispatch html decorate_annotation html decorate_column_dend html decorate_column_names html decorate_column_title html decorate_dend html decorate_dimnames html decorate_heatmap_body html decorate_row_dend html decorate_row_names html decorate_row_title html decorate_title html default_axis_param html default_get_type html dend_heights html dend_xy html dendrogramGrob html densityHeatmap html dim.Heatmap html dist2 html draw-AnnotationFunction-method html draw-Heatmap-method html draw-HeatmapAnnotation-method html draw-HeatmapList-method html draw-Legends-method html draw-SingleAnnotation-method html draw-dispatch html draw_annotation-Heatmap-method html draw_annotation_legend-HeatmapList-method html draw_dend-Heatmap-method html draw_dimnames-Heatmap-method html draw_heatmap_body-Heatmap-method html draw_heatmap_legend-HeatmapList-method html draw_heatmap_list-HeatmapList-method html draw_title-Heatmap-method html draw_title-HeatmapList-method html draw_title-dispatch html extract_comb html frequencyHeatmap html full_comb_code html getXY_in_parent_vp html get_color_mapping_list-HeatmapAnnotation-method html get_legend_param_list-HeatmapAnnotation-method html grid.annotation_axis html grid.boxplot html grid.dendrogram html grid.draw.Legends html gt_render html heatmap_legend_size-HeatmapList-method html height.AnnotationFunction html height.Heatmap html height.HeatmapAnnotation html height.HeatmapList html height.Legends html height.SingleAnnotation html heightAssign.AnnotationFunction html heightAssign.HeatmapAnnotation html heightAssign.SingleAnnotation html heightDetails.annotation_axis html heightDetails.legend html heightDetails.legend_body html heightDetails.packed_legends html ht_global_opt html ht_opt html ht_size html is_abs_unit html length.HeatmapAnnotation html length.HeatmapList html list_components html list_to_matrix html make_column_cluster-Heatmap-method html make_comb_mat html make_layout-Heatmap-method html make_layout-HeatmapList-method html make_layout-dispatch html make_row_cluster-Heatmap-method html map_to_colors-ColorMapping-method html max_text_height html max_text_width html merge_dendrogram html names.HeatmapAnnotation html names.HeatmapList html namesAssign.HeatmapAnnotation html ncol.Heatmap html nobs.AnnotationFunction html nobs.HeatmapAnnotation html nobs.SingleAnnotation html normalize_comb_mat html normalize_genomic_signals_to_bins html nrow.Heatmap html oncoPrint html order.comb_mat html packLegend html pct_v_pct html pheatmap html pindex html plot.Heatmap html plot.HeatmapAnnotation html plot.HeatmapList html prepare-Heatmap-method html print.comb_mat html re_size-HeatmapAnnotation-method html restore_matrix html rowAnnotation html row_anno_barplot html row_anno_boxplot html row_anno_density html row_anno_histogram html row_anno_points html row_anno_text html row_dend-Heatmap-method html row_dend-HeatmapList-method html row_dend-dispatch html row_order-Heatmap-method html row_order-HeatmapList-method html row_order-dispatch html set_component_height-Heatmap-method html set_component_width-Heatmap-method html set_name html set_nameAssign html set_size html show-AnnotationFunction-method html show-ColorMapping-method html show-Heatmap-method html show-HeatmapAnnotation-method html show-HeatmapList-method html show-SingleAnnotation-method html show-dispatch html size.AnnotationFunction html size.HeatmapAnnotation html size.SingleAnnotation html sizeAssign.AnnotationFunction html sizeAssign.HeatmapAnnotation html sizeAssign.SingleAnnotation html smartAlign2 html str.comb_mat html subset_gp html subset_matrix_by_row html subset_no html subset_vector html summary.Heatmap html summary.HeatmapList html t.comb_mat html test_alter_fun html unify_mat_list html upset_left_annotation html upset_right_annotation html upset_top_annotation html width.AnnotationFunction html width.Heatmap html width.HeatmapAnnotation html width.HeatmapList html width.Legends html width.SingleAnnotation html widthAssign.AnnotationFunction html widthAssign.HeatmapAnnotation html widthAssign.SingleAnnotation html widthDetails.annotation_axis html widthDetails.legend html widthDetails.legend_body html widthDetails.packed_legends html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ComplexHeatmap' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ComplexHeatmap' as ComplexHeatmap_2.10.0.zip * DONE (ComplexHeatmap) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ComplexHeatmap' successfully unpacked and MD5 sums checked