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This page was generated on 2022-04-13 12:06:20 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for Clonality on tokay2


To the developers/maintainers of the Clonality package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Clonality.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 332/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Clonality 1.42.0  (landing page)
Irina Ostrovnaya
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/Clonality
git_branch: RELEASE_3_14
git_last_commit: 3792eeb
git_last_commit_date: 2021-10-26 11:57:48 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Clonality
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Clonality_1.42.0.tar.gz && rm -rf Clonality.buildbin-libdir && mkdir Clonality.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Clonality.buildbin-libdir Clonality_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Clonality_1.42.0.zip && rm Clonality_1.42.0.tar.gz Clonality_1.42.0.zip
StartedAt: 2022-04-12 04:08:21 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:09:39 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 77.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Clonality_1.42.0.tar.gz && rm -rf Clonality.buildbin-libdir && mkdir Clonality.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Clonality.buildbin-libdir Clonality_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Clonality_1.42.0.zip && rm Clonality_1.42.0.tar.gz Clonality_1.42.0.zip
###
##############################################################################
##############################################################################


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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 24 2436k   24  593k    0     0   637k      0  0:00:03 --:--:--  0:00:03  637k
 87 2436k   87 2123k    0     0  1100k      0  0:00:02  0:00:01  0:00:01 1100k
100 2436k  100 2436k    0     0  1172k      0  0:00:02  0:00:02 --:--:-- 1173k

install for i386

* installing *source* package 'Clonality' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Clonality'
    finding HTML links ... done
    Clonality-internal                      html  
    Clonality-package                       html  
    ECMtesting                              html  
    LOHclonality                            html  
    LRtesting3or4tumors                     html  
    SNVtest                                 html  
    SNVtest2                                html  
    ave.adj.probes                          html  
    chromosomePlots                         html  
    clonEM                                  html  
    clonality.analysis                      html  
    create.mutation.matrix                  html  
    freqdata                                html  
    genomewidePlots                         html  
    get.mutation.frequencies                html  
    grid.lik                                html  
    histogramPlot                           html  
    lcis                                    html  
    model.lik                               html  
    mutation.proba                          html  
    mutation.rem                            html  
    print.mutation.proba                    html  
    print.mutation.rem                      html  
    splitChromosomes                        html  
    xidens                                  html  
** building package indices
** installing vignettes
   'Clonality.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Clonality' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Clonality' as Clonality_1.42.0.zip
* DONE (Clonality)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'Clonality' successfully unpacked and MD5 sums checked