############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CeTF_1.6.0.tar.gz && rm -rf CeTF.buildbin-libdir && mkdir CeTF.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CeTF.buildbin-libdir CeTF_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CeTF_1.6.0.zip && rm CeTF_1.6.0.tar.gz CeTF_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 27 1801k 27 496k 0 0 1021k 0 0:00:01 --:--:-- 0:00:01 1022k 100 1801k 100 1801k 0 0 1582k 0 0:00:01 0:00:01 --:--:-- 1582k install for i386 * installing *source* package 'CeTF' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PCIT.cpp -o PCIT.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CeTF.dll tmp.def PCIT.o RcppExports.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/CeTF.buildbin-libdir/00LOCK-CeTF/00new/CeTF/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CeTF' finding HTML links ... done CeTF-class html CeTFdemo html CircosTargets html InputData-methods html NetworkData-methods html OutputData-methods html PCIT html RIF html RIFPlot html RIF_input html SmearPlot html TFs html bivar.awk html clustCoef html clustCoefPercentage html densityPlot html diffusion html enrichPlot html enrichdemo html expDiff html getDE-methods html getData-methods html getEnrich html getGroupGO html heatPlot html histPlot html netConditionsPlot html netGOTFPlot html normExp html pcitC html refGenes html runAnalysis html simCounts html simNorm html tolerance html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CeTF' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PCIT.cpp -o PCIT.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CeTF.dll tmp.def PCIT.o RcppExports.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/CeTF.buildbin-libdir/CeTF/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'CeTF' as CeTF_1.6.0.zip * DONE (CeTF) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CeTF' successfully unpacked and MD5 sums checked