Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:24 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for CSSQ on tokay2


To the developers/maintainers of the CSSQ package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CSSQ.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 425/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CSSQ 1.6.0  (landing page)
Fan Lab at Georgia Institute of Technology
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/CSSQ
git_branch: RELEASE_3_14
git_last_commit: a7b96ca
git_last_commit_date: 2021-10-26 12:56:31 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CSSQ
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CSSQ_1.6.0.tar.gz && rm -rf CSSQ.buildbin-libdir && mkdir CSSQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CSSQ.buildbin-libdir CSSQ_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CSSQ_1.6.0.zip && rm CSSQ_1.6.0.tar.gz CSSQ_1.6.0.zip
StartedAt: 2022-04-12 06:14:44 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:16:48 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 124.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CSSQ_1.6.0.tar.gz && rm -rf CSSQ.buildbin-libdir && mkdir CSSQ.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CSSQ.buildbin-libdir CSSQ_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CSSQ_1.6.0.zip && rm CSSQ_1.6.0.tar.gz CSSQ_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 18  854k   18  160k    0     0   420k      0  0:00:02 --:--:--  0:00:02  420k
100  854k  100  854k    0     0   624k      0  0:00:01  0:00:01 --:--:--  624k
100  854k  100  854k    0     0   624k      0  0:00:01  0:00:01 --:--:--  624k

install for i386

* installing *source* package 'CSSQ' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CSSQ'
    finding HTML links ... done
    DBAnalyze                               html  
    ansTransform                            html  
    calculateFC                             html  
    calculatePvalue                         html  
    calculateTvalue                         html  
    getBgSubVal                             html  
    getComparisons                          html  
    getNewLabels                            html  
    getRegionCounts                         html  
    kmeansNormalize                         html  
    loadCountData                           html  
    normalizeData                           html  
    plotDist                                html  
    preprocessData                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CSSQ' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CSSQ' as CSSQ_1.6.0.zip
* DONE (CSSQ)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CSSQ' successfully unpacked and MD5 sums checked