############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CODEX_1.26.0.tar.gz && rm -rf CODEX.buildbin-libdir && mkdir CODEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CODEX.buildbin-libdir CODEX_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CODEX_1.26.0.zip && rm CODEX_1.26.0.tar.gz CODEX_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 93 734k 93 684k 0 0 872k 0 --:--:-- --:--:-- --:--:-- 872k 100 734k 100 734k 0 0 894k 0 --:--:-- --:--:-- --:--:-- 894k install for i386 * installing *source* package 'CODEX' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CODEX' finding HTML links ... done CODEX-package html bambedObjDemo html choiceofK html coverageObjDemo html gcDemo html getbambed html getcoverage html getgc html getmapp html mappDemo html mapp_ref html mappability html normObjDemo html normalize html normalize2 html qc html qcObjDemo html segment html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CODEX' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CODEX' as CODEX_1.26.0.zip * DONE (CODEX) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CODEX' successfully unpacked and MD5 sums checked