############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CNORdt_1.36.0.tar.gz && rm -rf CNORdt.buildbin-libdir && mkdir CNORdt.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNORdt.buildbin-libdir CNORdt_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CNORdt_1.36.0.zip && rm CNORdt_1.36.0.tar.gz CNORdt_1.36.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 70619 100 70619 0 0 134k 0 --:--:-- --:--:-- --:--:-- 134k install for i386 * installing *source* package 'CNORdt' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c simulatorDT.c -o simulatorDT.o simulatorDT.c: In function 'simulatorDT': simulatorDT.c:55:6: warning: unused variable 'nTimes' [-Wunused-variable] int nTimes = INTEGER(nTimes_in)[0]; ^~~~~~ simulatorDT.c:53:6: warning: unused variable 'nSignals' [-Wunused-variable] int nSignals = INTEGER(nSignals_in)[0]; ^~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o CNORdt.dll tmp.def simulatorDT.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/CNORdt.buildbin-libdir/00LOCK-CNORdt/00new/CNORdt/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CNORdt' finding HTML links ... done CNOlistPB html computeScoreDT html convert2array html cutAndPlotResultsDT html finding level-2 HTML links ... done gaBinaryDT html getFitDT html modelPB html simulatorDT html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CNORdt' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c simulatorDT.c -o simulatorDT.o simulatorDT.c: In function 'simulatorDT': simulatorDT.c:55:6: warning: unused variable 'nTimes' [-Wunused-variable] int nTimes = INTEGER(nTimes_in)[0]; ^~~~~~ simulatorDT.c:53:6: warning: unused variable 'nSignals' [-Wunused-variable] int nSignals = INTEGER(nSignals_in)[0]; ^~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CNORdt.dll tmp.def simulatorDT.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/CNORdt.buildbin-libdir/CNORdt/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'CNORdt' as CNORdt_1.36.0.zip * DONE (CNORdt) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CNORdt' successfully unpacked and MD5 sums checked