############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CINdex_1.22.0.tar.gz && rm -rf CINdex.buildbin-libdir && mkdir CINdex.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CINdex.buildbin-libdir CINdex_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CINdex_1.22.0.zip && rm CINdex_1.22.0.tar.gz CINdex_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 13 11.8M 13 1695k 0 0 1750k 0 0:00:06 --:--:-- 0:00:06 1751k 37 11.8M 37 4537k 0 0 2307k 0 0:00:05 0:00:01 0:00:04 2308k 68 11.8M 68 8305k 0 0 2798k 0 0:00:04 0:00:02 0:00:02 2798k 100 11.8M 100 11.8M 0 0 3201k 0 0:00:03 0:00:03 --:--:-- 3202k install for i386 * installing *source* package 'CINdex' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'CINdex' ** help *** installing help indices converting help for package 'CINdex' finding HTML links ... done clin.crc html cnvgr.18.auto html comp.heatmap html cyto.cin4heatmap html cytobands.cin html extract.genes.in.cyto.regions html geneAnno html grl.data html hg18.ucsctrack html run.cin.chr html run.cin.cyto html snpgr.18.auto html ttest.cyto.cin.heatmap html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'CINdex' ** testing if installed package can be loaded from final location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'CINdex' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CINdex' ... ** testing if installed package can be loaded Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'CINdex' * MD5 sums packaged installation of 'CINdex' as CINdex_1.22.0.zip * DONE (CINdex) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CINdex' successfully unpacked and MD5 sums checked