##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CAGEfightR_1.14.0.tar.gz && rm -rf CAGEfightR.buildbin-libdir && mkdir CAGEfightR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEfightR.buildbin-libdir CAGEfightR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CAGEfightR_1.14.0.zip && rm CAGEfightR_1.14.0.tar.gz CAGEfightR_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 55 2312k   55 1273k    0     0  1481k      0  0:00:01 --:--:--  0:00:01 1482k
100 2312k  100 2312k    0     0  1445k      0  0:00:01  0:00:01 --:--:-- 1446k

install for i386

* installing *source* package 'CAGEfightR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CAGEfightR'
    finding HTML links ... done
    assignGeneID                            html  
    assignMissingID                         html  
    assignTxID                              html  
    assignTxType                            html  
    balanceBC                               html  
    balanceD                                html  
    bwCommonGenome                          html  
    bwGenomeCompatibility                   html  
    bwValid                                 html  
    calcBidirectionality                    html  
    calcComposition                         html  
    calcPooled                              html  
    calcShape                               html  
    calcSupport                             html  
    calcTPM                                 html  
    calcTotalTags                           html  
    checkCTSSs                              html  
    checkPeaked                             html  
    checkPooled                             html  
    clusterBidirectionally                  html  
    clusterUnidirectionally                 html  
    combineClusters                         html  
    convertBAM2BigWig                       html  
    convertBED2BigWig                       html  
    convertGRanges2GPos                     html  
    exampleDesign                           html  
    findLinks                               html  
    findStretches                           html  
    quantifyCTSSs                           html  
    quantifyCTSSs2                          html  
    quantifyClusters                        html  
    quantifyGenes                           html  
    quickEnhancers                          html  
    quickGenes                              html  
    quickTSSs                               html  
    shapeEntropy                            html  
    shapeIQR                                html  
    shapeMean                               html  
    shapeMultimodality                      html  
    subsetByBidirectionality                html  
    subsetByComposition                     html  
    subsetBySupport                         html  
    swapRanges                              html  
    swapScores                              html  
    trackBalance                            html  
    trackCTSS                               html  
    trackClusters                           html  
    trackLinks                              html  
    trimToPeak                              html  
    trimToPercentiles                       html  
    tuneTagClustering                       html  
    utilsAggregateRows                      html  
    utilsDeStrand                           html  
    utilsScoreOverlaps                      html  
    utilsSimplifyTxDb                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CAGEfightR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CAGEfightR' as CAGEfightR_1.14.0.zip
* DONE (CAGEfightR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CAGEfightR' successfully unpacked and MD5 sums checked