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This page was generated on 2022-04-13 12:06:13 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for BgeeDB on tokay2


To the developers/maintainers of the BgeeDB package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BgeeDB.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 141/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BgeeDB 2.20.1  (landing page)
Julien Wollbrett , Julien Roux , Andrea Komljenovic , Frederic Bastian
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/BgeeDB
git_branch: RELEASE_3_14
git_last_commit: e7dc7fe
git_last_commit_date: 2022-03-28 12:38:43 -0400 (Mon, 28 Mar 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    TIMEOUT  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: BgeeDB
Version: 2.20.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BgeeDB_2.20.1.tar.gz && rm -rf BgeeDB.buildbin-libdir && mkdir BgeeDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BgeeDB.buildbin-libdir BgeeDB_2.20.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BgeeDB_2.20.1.zip && rm BgeeDB_2.20.1.tar.gz BgeeDB_2.20.1.zip
StartedAt: 2022-04-12 06:57:00 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:57:48 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 47.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BgeeDB_2.20.1.tar.gz && rm -rf BgeeDB.buildbin-libdir && mkdir BgeeDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BgeeDB.buildbin-libdir BgeeDB_2.20.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BgeeDB_2.20.1.zip && rm BgeeDB_2.20.1.tar.gz BgeeDB_2.20.1.zip
###
##############################################################################
##############################################################################


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100 72281  100 72281    0     0   457k      0 --:--:-- --:--:-- --:--:--  458k

install for i386

* installing *source* package 'BgeeDB' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
  converting help for package 'BgeeDB'
    finding HTML links ... done
    Bgee-class                              html  
    deleteLocalData                         html  
    deleteOldData                           html  
    formatData                              html  
    geneList                                html  
    getAnnotation                           html  
    getData                                 html  
    listBgeeRelease                         html  
    listBgeeSpecies                         html  
    loadTopAnatData                         html  
    makeTable                               html  
    topAnat                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BgeeDB' ...
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'BgeeDB' as BgeeDB_2.20.1.zip
* DONE (BgeeDB)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BgeeDB' successfully unpacked and MD5 sums checked