############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BUSseq_1.0.0.tar.gz && rm -rf BUSseq.buildbin-libdir && mkdir BUSseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUSseq.buildbin-libdir BUSseq_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BUSseq_1.0.0.zip && rm BUSseq_1.0.0.tar.gz BUSseq_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 334k 100 334k 0 0 352k 0 --:--:-- --:--:-- --:--:-- 352k 100 334k 100 334k 0 0 352k 0 --:--:-- --:--:-- --:--:-- 352k install for i386 * installing *source* package 'BUSseq' ... ** using staged installation ** libs C:/Users/BIOCBU~1/BBS-3~1.14-/R/share/make/winshlib.mk:16: warning: overriding recipe for target 'BUSseq.dll' Makevars.win:9: warning: ignoring old recipe for target 'BUSseq.dll' "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BUSseq.cpp -o BUSseq.o BUSseq.cpp: In function 'double postprob_DE_thr_fun(double*, double, int, int)': BUSseq.cpp:964:69: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] while((fdr <= _fdr_threshold) & (kappa <= postprob_DE_thr) & (i < (unsigned)vec_PPI.size())){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ BUSseq.cpp: In function 'void BUSseq_inference(int*, int*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, double*)': BUSseq.cpp:2674:7: warning: variable 'All_Drop' set but not used [-Wunused-but-set-variable] bool All_Drop = true; ^~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rngstream.cpp -o rngstream.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BUSseq.dll tmp.def BUSseq.o rngstream.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BUSseq.buildbin-libdir/00LOCK-BUSseq/00new/BUSseq/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BUSseq' finding HTML links ... done BIC_BUSseq html BUSseq-package html BUSseq_MCMC html BUSseqfits_example html baseline_expression_values html cell_effect_values html celltype_effects html celltype_mean_expression html celltypes html corrected_read_counts html dropout_coefficient_values html heatmap_data_BUSseq html imputed_read_counts html intrinsic_genes_BUSseq html location_batch_effects html overdispersions html raw_read_counts html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BUSseq' ... ** libs C:/Users/BIOCBU~1/BBS-3~1.14-/R/share/make/winshlib.mk:16: warning: overriding recipe for target 'BUSseq.dll' Makevars.win:9: warning: ignoring old recipe for target 'BUSseq.dll' "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BUSseq.cpp -o BUSseq.o BUSseq.cpp: In function 'double postprob_DE_thr_fun(double*, double, int, int)': BUSseq.cpp:964:69: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] while((fdr <= _fdr_threshold) & (kappa <= postprob_DE_thr) & (i < (unsigned)vec_PPI.size())){ ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ BUSseq.cpp: In function 'void BUSseq_inference(int*, int*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, double*)': BUSseq.cpp:2674:7: warning: variable 'All_Drop' set but not used [-Wunused-but-set-variable] bool All_Drop = true; ^~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rngstream.cpp -o rngstream.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BUSseq.dll tmp.def BUSseq.o rngstream.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BUSseq.buildbin-libdir/BUSseq/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BUSseq' as BUSseq_1.0.0.zip * DONE (BUSseq) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'BUSseq' successfully unpacked and MD5 sums checked