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This page was generated on 2022-04-13 12:06:16 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for BUScorrect on tokay2


To the developers/maintainers of the BUScorrect package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUScorrect.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 230/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BUScorrect 1.12.0  (landing page)
Xiangyu Luo
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/BUScorrect
git_branch: RELEASE_3_14
git_last_commit: 55c99c8
git_last_commit_date: 2021-10-26 12:46:16 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BUScorrect
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BUScorrect_1.12.0.tar.gz && rm -rf BUScorrect.buildbin-libdir && mkdir BUScorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUScorrect.buildbin-libdir BUScorrect_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BUScorrect_1.12.0.zip && rm BUScorrect_1.12.0.tar.gz BUScorrect_1.12.0.zip
StartedAt: 2022-04-12 05:30:33 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:31:43 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 70.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BUScorrect_1.12.0.tar.gz && rm -rf BUScorrect.buildbin-libdir && mkdir BUScorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUScorrect.buildbin-libdir BUScorrect_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BUScorrect_1.12.0.zip && rm BUScorrect_1.12.0.tar.gz BUScorrect_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1 3250k    1 49867    0     0   315k      0  0:00:10 --:--:--  0:00:10  316k
 48 3250k   48 1585k    0     0  1392k      0  0:00:02  0:00:01  0:00:01 1392k
100 3250k  100 3250k    0     0  1763k      0  0:00:01  0:00:01 --:--:-- 1762k

install for i386

* installing *source* package 'BUScorrect' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c BUS_Cfunctions.c -o BUS_Cfunctions.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BUScorrect.buildbin-libdir/00LOCK-BUScorrect/00new/BUScorrect/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BUScorrect'
    finding HTML links ... done
    BIC_BUS                                 html  
    BUScorrect-package                      html  
    BUSexample_data                         html  
    BUSgibbs                                html  
    IG_index                                html  
    Subtypes                                html  
    adjusted_values                         html  
    baseline_expression_values              html  
    calculate_EPSR_gamma                    html  
    calculate_EPSR_mu                       html  
    calculate_EPSR_sigma_sq                 html  
    estimate_IG_indicators                  html  
    location_batch_effects                  html  
    postprob_DE                             html  
    postprob_DE_thr_fun                     html  
    print.BUSfits                           html  
    scale_batch_effects                     html  
    subtype_effects                         html  
    summary.BUSfits                         html  
    visualize_data                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BUScorrect' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c BUS_Cfunctions.c -o BUS_Cfunctions.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BUScorrect.buildbin-libdir/BUScorrect/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BUScorrect' as BUScorrect_1.12.0.zip
* DONE (BUScorrect)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BUScorrect' successfully unpacked and MD5 sums checked