############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BUScorrect_1.12.0.tar.gz && rm -rf BUScorrect.buildbin-libdir && mkdir BUScorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUScorrect.buildbin-libdir BUScorrect_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BUScorrect_1.12.0.zip && rm BUScorrect_1.12.0.tar.gz BUScorrect_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 3250k 1 49867 0 0 315k 0 0:00:10 --:--:-- 0:00:10 316k 48 3250k 48 1585k 0 0 1392k 0 0:00:02 0:00:01 0:00:01 1392k 100 3250k 100 3250k 0 0 1763k 0 0:00:01 0:00:01 --:--:-- 1762k install for i386 * installing *source* package 'BUScorrect' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BUS_Cfunctions.c -o BUS_Cfunctions.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BUScorrect.buildbin-libdir/00LOCK-BUScorrect/00new/BUScorrect/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BUScorrect' finding HTML links ... done BIC_BUS html BUScorrect-package html BUSexample_data html BUSgibbs html IG_index html Subtypes html adjusted_values html baseline_expression_values html calculate_EPSR_gamma html calculate_EPSR_mu html calculate_EPSR_sigma_sq html estimate_IG_indicators html location_batch_effects html postprob_DE html postprob_DE_thr_fun html print.BUSfits html scale_batch_effects html subtype_effects html summary.BUSfits html visualize_data html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BUScorrect' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BUS_Cfunctions.c -o BUS_Cfunctions.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BUScorrect.buildbin-libdir/BUScorrect/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BUScorrect' as BUScorrect_1.12.0.zip * DONE (BUScorrect) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'BUScorrect' successfully unpacked and MD5 sums checked